Factsheet for TraesCS5A01G243500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G241400.1	Wheat	nucleus	99.71	99.71
TraesCS5D01G250100.1	Wheat	nucleus	99.42	99.42
GSMUA_Achr9P15210_001	Banana	nucleus	77.49	84.94
GSMUA_Achr3P06840_001	Banana	nucleus	74.56	81.73
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	99.42	78.52
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	90.06	72.64
KXG35789	Sorghum	nucleus	92.4	72.15
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	92.98	72.11
Zm00001d020748_P002	Maize	plasma membrane	91.23	72.06
TraesCS6A01G204400.1	Wheat	mitochondrion	69.01	62.27
PGSC0003DMT400020621	Potato	nucleus	71.05	61.36
Bra027446.1-P	Field mustard	cytosol	56.73	60.62
VIT_18s0001g11080.t01	Wine grape	nucleus	72.22	59.09
KRH61258	Soybean	nucleus	70.47	58.92
KRH05723	Soybean	nucleus	70.47	58.35
KRH51956	Soybean	nucleus	68.42	56.93
CDY06734	Canola	mitochondrion	50.58	56.72
KRH15315	Soybean	nucleus	70.47	56.71
TraesCS2A01G317700.2	Wheat	plastid	69.01	55.66
Solyc04g079310.2.1	Tomato	nucleus	71.05	53.88
VIT_03s0063g00850.t01	Wine grape	nucleus	63.74	52.66
AT1G47500.1	Thale cress	nucleus	65.2	51.38
AT1G47490.1	Thale cress	nucleus	64.33	50.93
Bra018813.1-P	Field mustard	mitochondrion, nucleus	57.6	50.51
Solyc01g108500.2.1	Tomato	nucleus	60.82	50.36
PGSC0003DMT400066648	Potato	nucleus	60.82	49.52
Solyc10g050860.1.1	Tomato	nucleus	61.7	49.3
KRH50251	Soybean	nucleus	61.99	49.19
CDY52067	Canola	nucleus	59.94	48.93
KRH71168	Soybean	nucleus	61.4	48.72
CDX95176	Canola	nucleus	59.65	48.69
CDY16528	Canola	nucleus	58.48	47.17
TraesCS4A01G014200.1	Wheat	nucleus	57.31	47.12
CDY32840	Canola	nucleus	57.89	47.03
CDY29341	Canola	nucleus	57.6	47.02
TraesCS7A01G295700.3	Wheat	plastid	42.69	46.95
CDY28101	Canola	nucleus	58.19	46.39
CDY50959	Canola	nucleus	57.89	46.05
CDY68866	Canola	nucleus	55.85	46.02
AT3G19130.1	Thale cress	nucleus	57.31	45.06
CDY22988	Canola	nucleus	54.68	44.52
Bra040663.1-P	Field mustard	nucleus	48.25	44.35
CDX92304	Canola	nucleus	54.97	44.34
CDX82310	Canola	nucleus	53.22	44.17
Bra001735.1-P	Field mustard	nucleus	53.22	44.17
Bra022389.1-P	Field mustard	nucleus	54.97	44.13
CDX99265	Canola	nucleus	54.68	44.1
TraesCS6A01G100800.1	Wheat	nucleus	52.63	43.9
TraesCS2A01G473000.1	Wheat	nucleus	55.26	43.35
CDY18570	Canola	nucleus	54.39	42.86
CDX95462	Canola	nucleus	54.09	42.63
AT1G49600.3	Thale cress	nucleus	53.8	40.89
TraesCS2A01G221900.2	Wheat	nucleus	53.8	39.66
Bra037538.1-P	Field mustard	nucleus	46.49	39.45
TraesCS2A01G256500.1	Wheat	nucleus	40.94	39.33
Bra014216.1-P	Field mustard	nucleus	49.42	29.55
TraesCS2A01G169100.1	Wheat	nucleus	28.66	22.9
TraesCS7A01G252200.1	Wheat	mitochondrion, nucleus	28.36	21.7
TraesCS4A01G150000.1	Wheat	mitochondrion	28.36	21.65
TraesCS1A01G143500.1	Wheat	nucleus	17.54	16.3
TraesCS7A01G288700.1	Wheat	nucleus	28.66	14.8
TraesCS3A01G076800.1	Wheat	mitochondrion, nucleus, plasma membrane, plastid	22.51	13.8
TraesCS2A01G359000.1	Wheat	cytosol	26.61	13.68
TraesCS5A01G161800.2	Wheat	nucleus	26.02	13.67
TraesCS4A01G099500.1	Wheat	cytosol	24.85	13.04

Protein Annotations

EnsemblPlants:TraesCS5A01G243500.1	EnsemblPlantsGene:TraesCS5A01G243500	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR43955
PANTHER:PTHR43955:SF5	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
TIGR:cd12344	TIGR:cd12345	TIGR:cd12346	MapMan:16.9.4	:	:

Description

No Description!

Coordinates

chr5A:+:458102660..458106070

Molecular Weight (calculated)

37277.1 Da

IEP (calculated)

6.364

GRAVY (calculated)

-0.563

Length

342 amino acids

Sequence
(BLAST)

001: MGSPAPAAQP GQEENKTIWV GDLHYWMDEN YLHTCFGYTG EVVAIKVIRN KQTGQSEGYG FVEFYSHAAA EKVLDGFAGH IMPNTDQPFR INWASFSMGD
101: RRSDIASDHS IFVGDLASDV NDTALLETFS SRYSSVKGAK VVIDANTGRS KGYGFVRFGD DSEKTNAMTE MNGVYCSTRP MRIGPATPRK SSGTSGSTGS
201: SARSDRDLTN TTVFVGGLDP NVSEDDLKQT FSQYGEISSV KIPVGKQCGF VQFLQRKNAE DALQGLNGST IGKQTVRLSW GRNPANKQLR SDNGNQWNNG
301: MYYAPSPFYN GYGYPAAPFP DPGMYAAAYG AYPVYGNQQQ VS

Best Arabidopsis Sequence Match ( AT1G47490.1 )
(BLAST)

001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS

Arabidopsis Description

RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.