Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52067 | Canola | nucleus | 98.09 | 98.09 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 47.02 | 63.14 |
| VIT_18s0001g11080.t01 | Wine grape | nucleus | 61.58 | 61.72 |
| PGSC0003DMT400020621 | Potato | nucleus | 58.23 | 61.62 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 45.82 | 61.54 |
| CDY06734 | Canola | mitochondrion | 44.63 | 61.31 |
| GSMUA_Achr10P... | Banana | nucleus | 45.35 | 60.51 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 44.87 | 60.06 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 48.93 | 59.94 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 48.93 | 59.94 |
| KRH61258 | Soybean | nucleus | 58.47 | 59.9 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 48.69 | 59.65 |
| KRH05723 | Soybean | nucleus | 58.47 | 59.32 |
| KRH51956 | Soybean | nucleus | 58.0 | 59.12 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 35.8 | 57.92 |
| KRH15315 | Soybean | nucleus | 58.47 | 57.65 |
| Solyc04g079310.2.1 | Tomato | nucleus | 58.95 | 54.77 |
| CDY68866 | Canola | nucleus | 52.74 | 53.25 |
| CDY32840 | Canola | nucleus | 53.46 | 53.21 |
| CDY16528 | Canola | nucleus | 53.7 | 53.07 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 47.97 | 53.03 |
| Os04t0449900-01 | Rice | plastid | 48.69 | 52.71 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 52.98 | 52.36 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 50.36 | 52.36 |
| CDY29341 | Canola | nucleus | 52.27 | 52.27 |
| Zm00001d020748_P002 | Maize | plasma membrane | 53.7 | 51.96 |
| KXG35789 | Sorghum | nucleus | 54.18 | 51.83 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 18.14 | 51.7 |
| CDY50959 | Canola | nucleus | 52.74 | 51.4 |
| CDY28101 | Canola | nucleus | 52.51 | 51.28 |
| CDY22988 | Canola | nucleus | 51.07 | 50.95 |
| CDX82310 | Canola | nucleus | 49.88 | 50.73 |
| CDX92304 | Canola | nucleus | 51.07 | 50.47 |
| CDX99265 | Canola | nucleus | 51.07 | 50.47 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 52.03 | 50.35 |
| EES10898 | Sorghum | nucleus | 50.12 | 49.65 |
| CDY18570 | Canola | nucleus | 51.31 | 49.54 |
| CDX95462 | Canola | nucleus | 51.07 | 49.31 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 48.93 | 49.16 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 48.69 | 48.92 |
| TraesCS2A01G317700.2 | Wheat | plastid | 49.4 | 48.82 |
| TraesCS2D01G315400.2 | Wheat | plastid | 49.4 | 48.82 |
| TraesCS2B01G335700.1 | Wheat | plastid | 48.69 | 48.57 |
| EES05289 | Sorghum | plastid | 49.64 | 47.82 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 49.4 | 46.94 |
| Zm00001d050838_P001 | Maize | plastid | 47.97 | 46.74 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 47.02 | 46.14 |
| CDY34835 | Canola | nucleus | 42.72 | 45.55 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 48.93 | 44.96 |
| Zm00001d025551_P002 | Maize | plastid | 47.97 | 44.47 |
| CDY14290 | Canola | nucleus | 43.91 | 44.12 |
| CDX89287 | Canola | nucleus | 43.44 | 43.96 |
| CDY66423 | Canola | nucleus | 44.63 | 43.9 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 49.64 | 43.88 |
| CDY17286 | Canola | nucleus | 42.0 | 43.46 |
| CDY46671 | Canola | nucleus | 44.39 | 43.36 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 43.91 | 43.19 |
| CDY19874 | Canola | nucleus | 42.48 | 42.48 |
| CDY29263 | Canola | nucleus | 42.48 | 42.48 |
| CDY13992 | Canola | nucleus | 41.05 | 41.05 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 41.29 | 40.23 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 41.29 | 40.23 |
| CDX92537 | Canola | nucleus | 40.1 | 40.1 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 42.48 | 35.11 |
| CDY63384 | Canola | mitochondrion, nucleus | 23.63 | 23.68 |
| CDY61476 | Canola | nucleus | 22.67 | 22.67 |
| CDY02486 | Canola | nucleus | 22.67 | 22.62 |
| CDY51403 | Canola | nucleus | 21.72 | 21.67 |
| CDY33092 | Canola | nucleus | 21.72 | 21.41 |
| CDY67365 | Canola | plastid | 13.6 | 19.52 |
| CDX81822 | Canola | mitochondrion, nucleus | 23.87 | 18.35 |
| CDY59539 | Canola | nucleus | 15.27 | 17.49 |
| CDY43894 | Canola | nucleus | 14.8 | 17.03 |
| CDY66740 | Canola | nucleus | 15.27 | 16.8 |
| CDY67617 | Canola | nucleus | 15.27 | 16.8 |
| CDX69025 | Canola | nucleus, plastid | 23.63 | 16.2 |
| CDY57754 | Canola | nucleus | 8.11 | 15.96 |
| CDX75397 | Canola | nucleus, plastid | 23.39 | 15.91 |
| CDY38939 | Canola | nucleus | 24.34 | 15.84 |
| CDX89562 | Canola | nucleus | 24.34 | 15.81 |
| CDY62723 | Canola | cytosol | 23.15 | 15.72 |
| CDY51957 | Canola | cytosol, plastid | 23.15 | 15.67 |
| CDY67921 | Canola | nucleus | 23.87 | 15.5 |
| CDX89664 | Canola | cytosol | 22.67 | 15.47 |
| CDX79296 | Canola | plastid | 6.68 | 15.3 |
| CDY46079 | Canola | nucleus | 22.91 | 15.26 |
| CDY72408 | Canola | plastid | 3.34 | 15.05 |
| CDY56198 | Canola | cytosol | 17.18 | 14.72 |
| CDY51045 | Canola | cytosol | 22.91 | 14.7 |
| CDY54068 | Canola | cytosol | 22.91 | 14.7 |
| CDX71223 | Canola | cytosol | 21.96 | 14.42 |
| CDY30168 | Canola | cytosol | 17.9 | 13.94 |
| CDY36634 | Canola | nucleus | 21.24 | 13.71 |
| CDY41472 | Canola | cytosol, plastid | 20.76 | 13.57 |
| CDY36684 | Canola | plastid | 21.0 | 13.23 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 20.29 | 13.12 |
| CDY33264 | Canola | mitochondrion, nucleus | 6.21 | 13.0 |
| CDX72826 | Canola | plastid | 20.76 | 12.72 |
| CDX96344 | Canola | plastid | 20.76 | 12.72 |
| CDY37935 | Canola | nucleus | 19.33 | 12.44 |
| CDY03685 | Canola | nucleus | 19.09 | 12.44 |
| CDY67364 | Canola | nucleus | 7.16 | 10.24 |
| CDX92325 | Canola | nucleus | 6.92 | 9.01 |
| CDY37229 | Canola | cytosol | 3.58 | 7.04 |
| CDX91689 | Canola | nucleus | 4.53 | 6.23 |
| CDY08990 | Canola | cytosol | 0.72 | 3.03 |
| CDX79295 | Canola | cytosol, plastid | 0.72 | 3.0 |
Protein Annotations
| EnsemblPlants:CDX95176 | EnsemblPlantsGene:GSBRNA2T00100751001 | Gene3D:3.30.70.330 | GO:A0A078E1A5 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR43955 | PANTHER:PTHR43955:SF5 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX95176 | ProteinID:CDX95176.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EC6E1B | MapMan:16.9.4 | : |
Description
BnaC09g16940D
Coordinates
chrLK031887:+:212270..214935
Molecular Weight (calculated)
46751.9 Da
IEP (calculated)
7.412
GRAVY (calculated)
-0.721
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MADTKVQSPE TTAVEDNHQR ITSSSPTPPP PPSHWMGMRY PSPMMMPHHM MYPPPPYSPY HHHNHMYHHN HHHQSRGNKH QNASNAENKT IWIGDLLHWM
101: DENYLNSCFA PAGEMASVKV IRNKHTGLSE GYGFVEFDSH DVAEKVLQDF NGVTMLQSDQ PYRLNWASFS TGEKRLENGP DHSIFVGDLA PEVTDELLHK
201: LFFHKYPSVK TAKVVIDGST GRSKGYGFVR FGDDGERSKA LVEMNGVKCC SRAMRVGAAT PRKPNGYNHQ GGGAAPRDGD SLNTTIFVGG LDADVTDEVL
301: RQPFAGFGEI VSVKIPIGKG CGFIQFVNRE NAEEALEKLN GSVIGKQTVR LSWGRNQGNK QPRGGYGDQW VEPFYRGQYY NGYGYMPLPP PIDPRMYGAA
401: PYGGYPMYGG HQQQQQQVS
101: DENYLNSCFA PAGEMASVKV IRNKHTGLSE GYGFVEFDSH DVAEKVLQDF NGVTMLQSDQ PYRLNWASFS TGEKRLENGP DHSIFVGDLA PEVTDELLHK
201: LFFHKYPSVK TAKVVIDGST GRSKGYGFVR FGDDGERSKA LVEMNGVKCC SRAMRVGAAT PRKPNGYNHQ GGGAAPRDGD SLNTTIFVGG LDADVTDEVL
301: RQPFAGFGEI VSVKIPIGKG CGFIQFVNRE NAEEALEKLN GSVIGKQTVR LSWGRNQGNK QPRGGYGDQW VEPFYRGQYY NGYGYMPLPP PIDPRMYGAA
401: PYGGYPMYGG HQQQQQQVS
001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
Arabidopsis Description
RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.