Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79295 | Canola | cytosol, plastid | 16.72 | 51.0 |
| CDY08990 | Canola | cytosol | 16.07 | 49.49 |
| CDY41472 | Canola | cytosol, plastid | 81.64 | 38.85 |
| CDY37229 | Canola | cytosol | 24.92 | 35.68 |
| CDY67364 | Canola | nucleus | 28.85 | 30.03 |
| CDX96344 | Canola | plastid | 60.66 | 27.05 |
| CDX72826 | Canola | plastid | 60.33 | 26.9 |
| CDY36684 | Canola | plastid | 57.38 | 26.32 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 55.74 | 26.23 |
| CDY37935 | Canola | nucleus | 55.08 | 25.81 |
| CDY03685 | Canola | nucleus | 49.18 | 23.33 |
| CDX79296 | Canola | plastid | 11.48 | 19.13 |
| PGSC0003DMT400039842 | Potato | cytosol | 35.41 | 18.0 |
| VIT_18s0001g10170.t01 | Wine grape | cytosol | 36.39 | 17.34 |
| CDX75397 | Canola | nucleus, plastid | 34.43 | 17.05 |
| CDY46079 | Canola | nucleus | 35.08 | 17.01 |
| CDX69025 | Canola | nucleus, plastid | 33.44 | 16.69 |
| HORVU2Hr1G087390.3 | Barley | cytosol, mitochondrion, nucleus | 33.44 | 16.69 |
| CDY62723 | Canola | cytosol | 33.77 | 16.69 |
| CDY51957 | Canola | cytosol, plastid | 33.77 | 16.64 |
| GSMUA_Achr4P09890_001 | Banana | cytosol | 35.41 | 16.56 |
| KRH15385 | Soybean | nucleus | 35.41 | 16.56 |
| GSMUA_Achr9P00990_001 | Banana | cytosol | 35.08 | 16.44 |
| CDX89562 | Canola | nucleus | 34.75 | 16.43 |
| CDY67921 | Canola | nucleus | 34.75 | 16.43 |
| GSMUA_AchrUn_... | Banana | cytosol | 35.08 | 16.41 |
| CDY54068 | Canola | cytosol | 34.75 | 16.23 |
| Solyc12g088720.1.1 | Tomato | plastid | 35.41 | 16.22 |
| KRH05656 | Soybean | endoplasmic reticulum, nucleus | 34.75 | 16.21 |
| KRH52023 | Soybean | cytosol, endoplasmic reticulum | 33.44 | 16.19 |
| GSMUA_Achr4P20270_001 | Banana | cytosol | 34.1 | 16.17 |
| CDY38939 | Canola | nucleus | 34.1 | 16.15 |
| CDX89664 | Canola | cytosol | 32.46 | 16.12 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 34.43 | 16.1 |
| CDY51045 | Canola | cytosol | 34.43 | 16.08 |
| TraesCS5A01G161800.2 | Wheat | nucleus | 33.77 | 15.82 |
| TraesCS5B01G159400.1 | Wheat | cytosol | 33.77 | 15.82 |
| TraesCS5D01G167000.1 | Wheat | nucleus, unclear | 33.77 | 15.82 |
| CDX71223 | Canola | cytosol | 32.79 | 15.67 |
| EES12460 | Sorghum | plastid | 34.1 | 15.66 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 33.44 | 15.64 |
| Os08t0314800-02 | Rice | cytosol, nucleus, plasma membrane | 33.77 | 15.61 |
| KRH61326 | Soybean | cytosol, endoplasmic reticulum | 32.13 | 15.56 |
| Zm00001d019824_P004 | Maize | cytosol | 33.44 | 15.55 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 33.77 | 15.51 |
| TraesCS2A01G359000.1 | Wheat | cytosol | 33.77 | 15.49 |
| TraesCS2B01G378400.1 | Wheat | nucleus | 33.77 | 15.49 |
| Os04t0504800-01 | Rice | plasma membrane | 33.44 | 15.48 |
| Os09t0115400-01 | Rice | nucleus | 33.44 | 15.41 |
| KXG35258 | Sorghum | cytosol | 33.11 | 15.4 |
| TraesCS7D01G287900.1 | Wheat | cytosol | 32.13 | 15.36 |
| CDY36634 | Canola | nucleus | 32.46 | 15.25 |
| Zm00001d005276_P007 | Maize | cytosol | 32.46 | 15.14 |
| TraesCS7A01G288700.1 | Wheat | nucleus | 32.46 | 14.95 |
| HORVU5Hr1G050560.1 | Barley | plastid | 33.77 | 14.67 |
| HORVU7Hr1G063970.1 | Barley | cytosol, nucleus, plastid | 33.77 | 14.39 |
| CDX92325 | Canola | nucleus | 14.43 | 13.66 |
| GSMUA_Achr8P24250_001 | Banana | cytosol, plastid | 27.21 | 12.81 |
| TraesCS7B01G182800.3 | Wheat | cytosol | 26.23 | 11.85 |
| GSMUA_Achr7P05430_001 | Banana | nucleus | 34.1 | 11.5 |
| CDY43894 | Canola | nucleus | 9.51 | 7.97 |
| CDY59539 | Canola | nucleus | 9.18 | 7.65 |
| CDY66740 | Canola | nucleus | 9.18 | 7.35 |
| CDY67617 | Canola | nucleus | 9.18 | 7.35 |
| CDY06734 | Canola | mitochondrion | 6.56 | 6.56 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 7.54 | 5.35 |
| CDX92537 | Canola | nucleus | 7.21 | 5.25 |
| CDY46671 | Canola | nucleus | 7.21 | 5.13 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 7.21 | 5.12 |
| CDX89287 | Canola | nucleus | 6.89 | 5.07 |
| CDY14290 | Canola | nucleus | 6.89 | 5.04 |
| CDY13992 | Canola | nucleus | 6.89 | 5.01 |
| CDY29263 | Canola | nucleus | 6.89 | 5.01 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 6.89 | 4.93 |
| CDY66423 | Canola | nucleus | 6.89 | 4.93 |
| CDY67365 | Canola | plastid | 4.59 | 4.79 |
| CDY56198 | Canola | cytosol | 7.54 | 4.7 |
| CDY17286 | Canola | nucleus | 6.23 | 4.69 |
| CDY30168 | Canola | cytosol | 8.2 | 4.65 |
| CDX95176 | Canola | nucleus | 6.23 | 4.53 |
| CDY19874 | Canola | nucleus | 6.23 | 4.53 |
| CDY52067 | Canola | nucleus | 6.23 | 4.53 |
| CDY34835 | Canola | nucleus | 5.25 | 4.07 |
| CDY63384 | Canola | mitochondrion, nucleus | 4.92 | 3.59 |
| CDY22988 | Canola | nucleus | 4.92 | 3.57 |
| CDX81822 | Canola | mitochondrion, nucleus | 6.23 | 3.49 |
| CDX82310 | Canola | nucleus | 4.59 | 3.4 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 5.57 | 3.35 |
| CDY72408 | Canola | plastid | 0.98 | 3.23 |
| CDY61476 | Canola | nucleus | 4.26 | 3.1 |
| CDY02486 | Canola | nucleus | 4.26 | 3.1 |
| CDX92304 | Canola | nucleus | 4.26 | 3.07 |
| CDX99265 | Canola | nucleus | 4.26 | 3.07 |
| CDY33092 | Canola | nucleus | 4.26 | 3.06 |
| CDX95462 | Canola | nucleus | 4.26 | 3.0 |
| CDY18570 | Canola | nucleus | 4.26 | 3.0 |
| CDY68866 | Canola | nucleus | 3.93 | 2.89 |
| CDY29341 | Canola | nucleus | 3.93 | 2.86 |
| CDY51403 | Canola | nucleus | 3.93 | 2.86 |
| CDY32840 | Canola | nucleus | 3.93 | 2.85 |
| CDY16528 | Canola | nucleus | 3.93 | 2.83 |
| CDY28101 | Canola | nucleus | 3.93 | 2.8 |
| CDY50959 | Canola | nucleus | 3.93 | 2.79 |
| CDY57754 | Canola | nucleus | 1.64 | 2.35 |
| CDY33264 | Canola | mitochondrion, nucleus | 0.98 | 1.5 |
Protein Annotations
| EnsemblPlants:CDX91689 | EnsemblPlantsGene:GSBRNA2T00153167001 | Gene3D:1.10.1900.10 | GO:A0A078DT74 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR002004 | InterPro:PABP-dom | InterPro:PABP_HYD | PANTHER:PTHR24012 |
| PANTHER:PTHR24012:SF620 | PFAM:PF00658 | PFscan:PS51309 | ProteinID:CDX91689 | ProteinID:CDX91689.1 | SEG:seg |
| SMART:SM00517 | SUPFAM:SSF63570 | UniParc:UPI0004EE305E | MapMan:35.1 | : | : |
Description
BnaC08g06080D
Coordinates
chrLK031869:+:215223..220744
Molecular Weight (calculated)
33192.1 Da
IEP (calculated)
8.819
GRAVY (calculated)
-0.367
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVEGKNYQD VLKSLLARNT FFRYVPLDTI LSQTTVSAVS DTESSSSFKA PALFSQIRAP ESMQSPMTGF NHPRGGPMHG PPQHMYVGQN GRSSMVPSQP
101: MGYGFQPQFM PGMRPGSGPG NFIMPYPLQR QPQAGHRMGF GRGATNMPHH IQQQQQLIHH NPSPGMRYMN GAGNGRNGLE LSVSQGTLPP VMPLPIDASS
201: IGIVAPQNHQ KAPLLPISKL TSLLASASPA DRTRMLGERL YPLVERQEPL HVAKVTGMLL EMDQAEILHL MESPEALKSK VSEALDVLRL SADAPDHDLG
301: FSTID
101: MGYGFQPQFM PGMRPGSGPG NFIMPYPLQR QPQAGHRMGF GRGATNMPHH IQQQQQLIHH NPSPGMRYMN GAGNGRNGLE LSVSQGTLPP VMPLPIDASS
201: IGIVAPQNHQ KAPLLPISKL TSLLASASPA DRTRMLGERL YPLVERQEPL HVAKVTGMLL EMDQAEILHL MESPEALKSK VSEALDVLRL SADAPDHDLG
301: FSTID
001: MAAAVATGVA PATMVDQVPS PTAQTSVQVP VSIPLPSPVV VADQTHPNSS LYAGDLDPKV TEAHLFDLFK HVANVVSVRV CRDQNRRSLG YAYINFSNPN
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD
Arabidopsis Description
PAB3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64380]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.