Subcellular Localization
min:
: max
Winner_takes_all: nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72408 | Canola | plastid | 46.0 | 98.92 |
| Bra034301.1-P | Field mustard | mitochondrion | 54.5 | 98.2 |
| CDY57754 | Canola | nucleus | 64.0 | 60.09 |
| CDY30168 | Canola | cytosol | 84.5 | 31.41 |
| AT3G16380.1 | Thale cress | nucleus | 70.0 | 26.07 |
| CDY56198 | Canola | cytosol | 60.5 | 24.74 |
| CDY67365 | Canola | plastid | 36.0 | 24.66 |
| VIT_09s0002g03160.t01 | Wine grape | cytosol, nucleus, plastid, vacuole | 47.5 | 19.96 |
| GSMUA_Achr4P00840_001 | Banana | cytosol | 38.5 | 15.91 |
| KRH32613 | Soybean | cytosol | 37.0 | 15.13 |
| KRH19986 | Soybean | cytosol | 36.0 | 14.55 |
| CDY62723 | Canola | cytosol | 40.5 | 13.13 |
| CDY51957 | Canola | cytosol, plastid | 40.5 | 13.09 |
| CDY38939 | Canola | nucleus | 42.0 | 13.04 |
| CDX89664 | Canola | cytosol | 40.0 | 13.03 |
| CDX69025 | Canola | nucleus, plastid | 39.5 | 12.93 |
| CDY46079 | Canola | nucleus | 40.5 | 12.88 |
| CDX89562 | Canola | nucleus | 41.5 | 12.87 |
| CDY67921 | Canola | nucleus | 41.5 | 12.87 |
| CDX75397 | Canola | nucleus, plastid | 39.0 | 12.66 |
| Solyc09g008620.1.1 | Tomato | cytosol | 38.0 | 12.56 |
| CDX71223 | Canola | cytosol | 40.0 | 12.54 |
| PGSC0003DMT400033802 | Potato | cytosol | 38.0 | 12.5 |
| CDY36634 | Canola | nucleus | 40.0 | 12.33 |
| CDY41472 | Canola | cytosol, plastid | 39.5 | 12.32 |
| CDY03685 | Canola | nucleus | 39.0 | 12.13 |
| CDY37935 | Canola | nucleus | 39.0 | 11.98 |
| CDY54068 | Canola | cytosol | 39.0 | 11.94 |
| CDY51045 | Canola | cytosol | 39.0 | 11.94 |
| Os03t0278500-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 38.0 | 11.75 |
| Solyc10g085750.1.1 | Tomato | nucleus | 36.5 | 11.74 |
| KRH67800 | Soybean | cytosol | 37.0 | 11.71 |
| KRG96088 | Soybean | cytosol | 36.5 | 11.48 |
| PGSC0003DMT400021673 | Potato | cytosol | 36.0 | 11.46 |
| CDY36684 | Canola | plastid | 38.0 | 11.43 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 37.0 | 11.42 |
| CDX96344 | Canola | plastid | 39.0 | 11.4 |
| CDX72826 | Canola | plastid | 39.0 | 11.4 |
| TraesCS4D01G205700.1 | Wheat | cytosol | 36.5 | 11.18 |
| TraesCS4A01G099500.1 | Wheat | cytosol | 35.5 | 10.89 |
| HORVU4Hr1G059070.1 | Barley | cytosol | 35.5 | 10.86 |
| KXG40160 | Sorghum | nucleus | 39.0 | 10.82 |
| TraesCS4B01G204800.1 | Wheat | cytosol | 35.0 | 10.75 |
| Zm00001d047790_P001 | Maize | plastid | 38.5 | 10.48 |
| CDY43894 | Canola | nucleus | 15.5 | 8.52 |
| CDY59539 | Canola | nucleus | 15.5 | 8.47 |
| CDY67617 | Canola | nucleus | 16.0 | 8.4 |
| CDY66740 | Canola | nucleus | 16.0 | 8.4 |
| CDY06734 | Canola | mitochondrion | 10.5 | 6.89 |
| CDX99265 | Canola | nucleus | 14.5 | 6.84 |
| CDX92304 | Canola | nucleus | 14.5 | 6.84 |
| CDY22988 | Canola | nucleus | 14.0 | 6.67 |
| CDX82310 | Canola | nucleus | 13.5 | 6.55 |
| CDX95462 | Canola | nucleus | 14.0 | 6.45 |
| CDY18570 | Canola | nucleus | 14.0 | 6.45 |
| CDY17286 | Canola | nucleus | 13.0 | 6.42 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 13.5 | 6.28 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 13.5 | 6.28 |
| CDX95176 | Canola | nucleus | 13.0 | 6.21 |
| CDX92537 | Canola | nucleus | 13.0 | 6.21 |
| CDY61476 | Canola | nucleus | 13.0 | 6.21 |
| CDY52067 | Canola | nucleus | 13.0 | 6.21 |
| CDY19874 | Canola | nucleus | 13.0 | 6.21 |
| CDY13992 | Canola | nucleus | 13.0 | 6.21 |
| CDY02486 | Canola | nucleus | 13.0 | 6.19 |
| CDY51403 | Canola | nucleus | 13.0 | 6.19 |
| CDY33092 | Canola | nucleus | 13.0 | 6.12 |
| CDX89287 | Canola | nucleus | 12.5 | 6.04 |
| CDY68866 | Canola | nucleus | 12.5 | 6.02 |
| CDY63384 | Canola | mitochondrion, nucleus | 12.5 | 5.98 |
| CDY29263 | Canola | nucleus | 12.5 | 5.97 |
| CDY29341 | Canola | nucleus | 12.5 | 5.97 |
| CDY32840 | Canola | nucleus | 12.5 | 5.94 |
| CDY16528 | Canola | nucleus | 12.5 | 5.9 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 12.5 | 5.87 |
| CDY34835 | Canola | nucleus | 11.5 | 5.85 |
| CDY28101 | Canola | nucleus | 12.5 | 5.83 |
| CDY46671 | Canola | nucleus | 12.5 | 5.83 |
| CDY50959 | Canola | nucleus | 12.5 | 5.81 |
| CDY14290 | Canola | nucleus | 12.0 | 5.76 |
| CDY66423 | Canola | nucleus | 12.0 | 5.63 |
| CDX92325 | Canola | nucleus | 7.5 | 4.66 |
| CDX81822 | Canola | mitochondrion, nucleus | 12.5 | 4.59 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 11.0 | 4.34 |
| CDX79296 | Canola | plastid | 1.5 | 1.64 |
| CDY67364 | Canola | nucleus | 1.5 | 1.02 |
| CDX91689 | Canola | nucleus | 1.5 | 0.98 |
| CDY37229 | Canola | cytosol | 0.0 | 0.0 |
| CDX79295 | Canola | cytosol, plastid | 0.0 | 0.0 |
| CDY08990 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078H6V8 | UniProt:A0A078H6V8 | EnsemblPlants:CDY33264 | ProteinID:CDY33264 |
| ProteinID:CDY33264.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00054032001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR24012 |
| PANTHER:PTHR24012:SF674 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE4E4D |
Description
BnaA01g19310DBnaA01g19310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6V8]
Coordinates
chrLK032310:+:12360..13572
Molecular Weight (calculated)
22652.2 Da
IEP (calculated)
10.134
GRAVY (calculated)
-0.382
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MHIMWSQKDV AYRRRSGLGN LFVKNLDSSI TSSCLERMFS PFGVILSCKV AEENGQSKGF GFVQFATEQS AVAARLASQG SMVDGKKLFV AKFINRDERA
101: AMSGNQEFTN VYVKNLLESV TEDFLHTMFS QCGTVSSVVV KRDGMGRSRE VVCWKALRKA ERMEMLKQKH KDNFVVNNQR NKAARDIWKL WEDSLSKSDA
101: AMSGNQEFTN VYVKNLLESV TEDFLHTMFS QCGTVSSVVV KRDGMGRSRE VVCWKALRKA ERMEMLKQKH KDNFVVNNQR NKAARDIWKL WEDSLSKSDA
001: MALVKTETQA LGNHQHSSRF GSLYVGDLSP DVTEKDLIDK FSLNVPVVSV HLCRNSVTGK SMCYAYINFD SPFSASNAMT RLNHSDLKGK AMRIMWSQRD
101: LAYRRRTRTG FANLYVKNLD SSITSSCLER MFCPFGSILS CKVVEENGQS KGFGFVQFDT EQSAVSARSA LHGSMVYGKK LFVAKFINKD ERAAMAGNQD
201: STNVYVKNLI ETVTDDCLHT LFSQYGTVSS VVVMRDGMGR SRGFGFVNFC NPENAKKAME SLCGLQLGSK KLFVGKALKK DERREMLKQK FSDNFIAKPN
301: MRWSNLYVKN LSESMNETRL REIFGCYGQI VSAKVMCHEN GRSKGFGFVC FSNCEESKQA KRYLNGFLVD GKPIVVRVAE RKEDRIKRLQ QYFQAQPRQY
401: TQAPSAPSPA QPVLSYVSSS YGCFQPFQVG TSYYYMGNQV PQMSGHQNIT TYVPAGKVPL KERRSMHLVY KHPAYPVAKR GAKQTLVFKG EVNRNLEAAT
501: CSKATTSEEN RKEERRLTLS GKLSPEVKVE ESGKQLQ
101: LAYRRRTRTG FANLYVKNLD SSITSSCLER MFCPFGSILS CKVVEENGQS KGFGFVQFDT EQSAVSARSA LHGSMVYGKK LFVAKFINKD ERAAMAGNQD
201: STNVYVKNLI ETVTDDCLHT LFSQYGTVSS VVVMRDGMGR SRGFGFVNFC NPENAKKAME SLCGLQLGSK KLFVGKALKK DERREMLKQK FSDNFIAKPN
301: MRWSNLYVKN LSESMNETRL REIFGCYGQI VSAKVMCHEN GRSKGFGFVC FSNCEESKQA KRYLNGFLVD GKPIVVRVAE RKEDRIKRLQ QYFQAQPRQY
401: TQAPSAPSPA QPVLSYVSSS YGCFQPFQVG TSYYYMGNQV PQMSGHQNIT TYVPAGKVPL KERRSMHLVY KHPAYPVAKR GAKQTLVFKG EVNRNLEAAT
501: CSKATTSEEN RKEERRLTLS GKLSPEVKVE ESGKQLQ
Arabidopsis Description
PAB6Polyadenylate-binding protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O04319]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.