Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039603.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY59539 | Canola | nucleus | 97.53 | 96.99 |
| CDY67617 | Canola | nucleus | 94.23 | 90.03 |
| CDY66740 | Canola | nucleus | 94.23 | 90.03 |
| AT2G18510.1 | Thale cress | nucleus | 88.19 | 88.43 |
| VIT_04s0023g01470.t01 | Wine grape | nucleus | 73.63 | 71.85 |
| PGSC0003DMT400023075 | Potato | nucleus | 71.15 | 71.35 |
| Solyc03g118800.2.1 | Tomato | nucleus | 70.88 | 70.88 |
| KRH36396 | Soybean | endoplasmic reticulum | 70.88 | 70.68 |
| KRH27525 | Soybean | nucleus | 70.6 | 70.6 |
| PGSC0003DMT400014744 | Potato | nucleus | 70.33 | 70.33 |
| Os10t0457000-01 | Rice | nucleus | 68.41 | 70.14 |
| GSMUA_Achr5P20140_001 | Banana | nucleus | 69.78 | 69.4 |
| EER94133 | Sorghum | nucleus | 66.76 | 68.45 |
| Zm00001d014094_P002 | Maize | extracellular, plasma membrane | 66.48 | 67.79 |
| Zm00001d032807_P001 | Maize | nucleus | 66.21 | 67.13 |
| HORVU1Hr1G038240.1 | Barley | nucleus | 67.03 | 66.3 |
| TraesCS1D01G142300.1 | Wheat | nucleus | 66.76 | 66.03 |
| TraesCS1B01G160900.1 | Wheat | nucleus | 66.48 | 65.76 |
| TraesCS1A01G143500.1 | Wheat | nucleus | 66.21 | 65.49 |
| CDY67365 | Canola | plastid | 18.96 | 23.63 |
| CDY72408 | Canola | plastid | 5.77 | 22.58 |
| CDY06734 | Canola | mitochondrion | 13.74 | 16.39 |
| CDY51957 | Canola | cytosol, plastid | 27.47 | 16.16 |
| CDY38939 | Canola | nucleus | 28.57 | 16.15 |
| CDX89562 | Canola | nucleus | 28.57 | 16.12 |
| CDY46079 | Canola | nucleus | 27.75 | 16.06 |
| CDY62723 | Canola | cytosol | 27.2 | 16.05 |
| CDY51403 | Canola | nucleus | 18.41 | 15.95 |
| CDX75397 | Canola | nucleus, plastid | 26.92 | 15.91 |
| CDX69025 | Canola | nucleus, plastid | 26.65 | 15.88 |
| CDX89664 | Canola | cytosol | 26.65 | 15.8 |
| CDY33092 | Canola | nucleus | 18.41 | 15.76 |
| CDY67921 | Canola | nucleus | 27.75 | 15.66 |
| CDY63384 | Canola | mitochondrion, nucleus | 17.86 | 15.55 |
| CDY61476 | Canola | nucleus | 17.86 | 15.51 |
| CDY33264 | Canola | mitochondrion, nucleus | 8.52 | 15.5 |
| CDY02486 | Canola | nucleus | 17.86 | 15.48 |
| CDY13992 | Canola | nucleus | 17.58 | 15.27 |
| CDY54068 | Canola | cytosol | 27.2 | 15.16 |
| CDY51045 | Canola | cytosol | 27.2 | 15.16 |
| CDX92537 | Canola | nucleus | 17.31 | 15.04 |
| CDY52067 | Canola | nucleus | 17.03 | 14.8 |
| CDX95176 | Canola | nucleus | 17.03 | 14.8 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 17.31 | 14.79 |
| CDY34835 | Canola | nucleus | 15.93 | 14.76 |
| CDX71223 | Canola | cytosol | 25.82 | 14.73 |
| CDY46671 | Canola | nucleus | 17.31 | 14.69 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 25.82 | 14.51 |
| CDX89287 | Canola | nucleus | 16.48 | 14.49 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 17.03 | 14.42 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 17.03 | 14.42 |
| CDY14290 | Canola | nucleus | 16.48 | 14.39 |
| CDY36634 | Canola | nucleus | 25.55 | 14.33 |
| CDY29263 | Canola | nucleus | 16.48 | 14.32 |
| CDY36684 | Canola | plastid | 25.82 | 14.14 |
| CDY66423 | Canola | nucleus | 16.48 | 14.08 |
| CDY17286 | Canola | nucleus | 15.66 | 14.07 |
| CDY37935 | Canola | nucleus | 24.73 | 13.82 |
| CDY41472 | Canola | cytosol, plastid | 23.9 | 13.57 |
| CDX72826 | Canola | plastid | 25.27 | 13.45 |
| CDX96344 | Canola | plastid | 25.27 | 13.45 |
| CDX92304 | Canola | nucleus | 15.66 | 13.44 |
| CDY03685 | Canola | nucleus | 23.63 | 13.37 |
| CDY19874 | Canola | nucleus | 15.38 | 13.37 |
| CDX99265 | Canola | nucleus | 15.38 | 13.21 |
| CDY32840 | Canola | nucleus | 15.11 | 13.06 |
| CDY68866 | Canola | nucleus | 14.84 | 13.01 |
| CDY16528 | Canola | nucleus | 15.11 | 12.97 |
| CDX82310 | Canola | nucleus | 14.56 | 12.86 |
| CDY22988 | Canola | nucleus | 14.84 | 12.86 |
| CDY28101 | Canola | nucleus | 15.11 | 12.82 |
| CDY50959 | Canola | nucleus | 15.11 | 12.79 |
| CDX95462 | Canola | nucleus | 15.11 | 12.67 |
| CDY29341 | Canola | nucleus | 14.56 | 12.65 |
| CDY30168 | Canola | cytosol | 18.41 | 12.45 |
| CDY18570 | Canola | nucleus | 14.84 | 12.44 |
| CDY56198 | Canola | cytosol | 16.21 | 12.07 |
| CDX81822 | Canola | mitochondrion, nucleus | 17.86 | 11.93 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 16.48 | 11.83 |
| CDX79296 | Canola | plastid | 5.77 | 11.48 |
| CDY57754 | Canola | nucleus | 6.32 | 10.8 |
| CDY37229 | Canola | cytosol | 5.77 | 9.86 |
| CDX91689 | Canola | nucleus | 7.97 | 9.51 |
| CDY67364 | Canola | nucleus | 7.14 | 8.87 |
| CDY08990 | Canola | cytosol | 1.65 | 6.06 |
| CDX79295 | Canola | cytosol, plastid | 1.37 | 5.0 |
| CDX92325 | Canola | nucleus | 2.47 | 2.8 |
Protein Annotations
| MapMan:16.4.1.2.4.4 | Gene3D:3.30.70.330 | GO:A0A078I2S8 | UniProt:A0A078I2S8 | EnsemblPlants:CDY43894 | ProteinID:CDY43894 |
| ProteinID:CDY43894.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00077457001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44799 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:SF3B4_RRM1 | InterPro:SF3B4_RRM2 | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0002541100 | SEG:seg | : | : | : | : |
Description
BnaA07g01710DBnaA07g01710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2S8]
Coordinates
chrLK032572:-:23489..26262
Molecular Weight (calculated)
39942.5 Da
IEP (calculated)
7.344
GRAVY (calculated)
-0.694
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTRIAPGVG ANLLGQHSAE RNQEATVYVG GLEPQLSEEL LWELFVQAGP LVNVYVPKDR VTGLHLGYEF IEFRSEEDAD YAIKVLNMIK IHGKPIRVNK
101: VSQDKKSLDV GANLFIGNLD PDVDEKILYD TFSAFGGIAS NPKIMRDPDT GNSRGFGFIS YDSFDASDAA IESMTGQYLC NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPISQKSRPH TLFASGPPTA PQANGFPRPF ANGGMQPVPI PGPRPTPPPP PPQVYQTQPQ SWQSQPHQQQ HGLAVPPPMQ YHPPQGMPPP
301: PPPQFLHHQQ GFGGPRPPPP PQAMGMHQHG WPPQHMQQGG PPPPQQPMHY HHPMSMPPPP PHQG
101: VSQDKKSLDV GANLFIGNLD PDVDEKILYD TFSAFGGIAS NPKIMRDPDT GNSRGFGFIS YDSFDASDAA IESMTGQYLC NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPISQKSRPH TLFASGPPTA PQANGFPRPF ANGGMQPVPI PGPRPTPPPP PPQVYQTQPQ SWQSQPHQQQ HGLAVPPPMQ YHPPQGMPPP
301: PPPQFLHHQQ GFGGPRPPPP PQAMGMHQHG WPPQHMQQGG PPPPQQPMHY HHPMSMPPPP PHQG
001: MTTRIAPGVG ANLLGQHSAE RNQDATVYVG GLDAQLSEEL LWELFVQAGP VVNVYVPKDR VTNLHQNYGF IEYRSEEDAD YAIKVLNMIK LHGKPIRVNK
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG
Arabidopsis Description
emb2444Emb2444 [Source:UniProtKB/TrEMBL;Acc:A0A178VZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.