CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014094_P002	Maize	extracellular, plasma membrane	96.34	95.8
Zm00001d032807_P001	Maize	nucleus	96.06	94.99
Os10t0457000-01	Rice	nucleus	89.86	89.86
TraesCS1D01G142300.1	Wheat	nucleus	89.86	86.68
HORVU1Hr1G038240.1	Barley	nucleus	89.86	86.68
TraesCS1B01G160900.1	Wheat	nucleus	89.58	86.41
TraesCS1A01G143500.1	Wheat	nucleus	89.3	86.14
GSMUA_Achr5P20140_001	Banana	nucleus	76.9	74.59
VIT_04s0023g01470.t01	Wine grape	nucleus	78.31	74.53
KRH27525	Soybean	nucleus	76.06	74.18
KRH36396	Soybean	endoplasmic reticulum	76.06	73.97
Solyc03g118800.2.1	Tomato	nucleus	73.24	71.43
PGSC0003DMT400023075	Potato	nucleus	72.96	71.35
PGSC0003DMT400014744	Potato	nucleus	72.68	70.88
AT2G18510.1	Thale cress	nucleus	69.58	68.04
CDY66740	Canola	nucleus	71.83	66.93
Bra039603.1-P	Field mustard	nucleus	68.45	66.76
CDY43894	Canola	nucleus	68.45	66.76
Bra037217.1-P	Field mustard	nucleus	71.55	66.67
CDY67617	Canola	nucleus	71.55	66.67
CDY59539	Canola	nucleus	68.45	66.39
EES12460	Sorghum	plastid	30.7	16.42
OQU91463	Sorghum	nucleus	18.59	16.14
EER95414	Sorghum	nucleus	18.03	15.42
EES08860	Sorghum	nucleus	19.15	15.42
EES10898	Sorghum	nucleus	18.31	15.37
KXG35258	Sorghum	cytosol	27.89	15.09
EES15356	Sorghum	nucleus	18.87	14.99
EES05289	Sorghum	plastid	17.75	14.48
KXG35789	Sorghum	nucleus	17.75	14.38
EER95718	Sorghum	nucleus	14.65	14.36
EER89984	Sorghum	plastid	25.07	14.1
KXG27152	Sorghum	nucleus	16.62	13.59
KXG36337	Sorghum	nucleus	17.18	12.79
KXG24662	Sorghum	nucleus	16.34	12.72
KXG40160	Sorghum	nucleus	25.35	12.48
KXG27463	Sorghum	nucleus	16.62	5.48

Protein Annotations

MapMan:16.4.1.2.4.4	Gene3D:3.30.70.330	EntrezGene:8070527	UniProt:C5WZH3	EnsemblPlants:EER94133	ProteinID:EER94133
ProteinID:EER94133.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44799	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:SF3B4_RRM1	InterPro:SF3B4_RRM2	SMART:SM00360	EnsemblPlantsGene:SORBI_3001G230500	SUPFAM:SSF54928
unigene:Sbi.16312	UniParc:UPI0001A82943	RefSeq:XP_002467135.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:22262801..22266259

Molecular Weight (calculated)

38723.5 Da

IEP (calculated)

8.395

GRAVY (calculated)

-0.617

Length

355 amino acids

Sequence
(BLAST)

001: MTTRIAPGVG ANLLGQHSAE RNQDATTYVG NLDPQVSEEL LWELFVQAGP VVNVYVPKDR VTNLHQGYGF VEFRSEEDAD YAIKILNMIK LYGKPIRVNK
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIVT NPKIMRDPET GNSRGFGFVS YDSFESSDQA IEAMNNQHLC NRPITVSYAY KKDTKGERHG
201: TPAERLLAAN NPGSQKNRPH TMFASGPPTQ GLPNGGPPVP RPYGNGTIPG QIQHMRQPPP PPVGQFPPPM QMHGQPAWPA QQPMPPPMAS QLQYRLPMRP
301: PPPNMMPPPV SMVRPPPPPT GMSAPPMWIP PPPPPQQGGM PPPPMSMPPP PPPSG

Best Arabidopsis Sequence Match ( AT2G18510.1 )
(BLAST)

001: MTTRIAPGVG ANLLGQHSAE RNQDATVYVG GLDAQLSEEL LWELFVQAGP VVNVYVPKDR VTNLHQNYGF IEYRSEEDAD YAIKVLNMIK LHGKPIRVNK
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG

Arabidopsis Description

emb2444Emb2444 [Source:UniProtKB/TrEMBL;Acc:A0A178VZK5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.