CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007929_P002	Maize	nucleus	78.73	79.39
TraesCS2D01G266400.1	Wheat	nucleus	53.31	54.21
TraesCS2A01G256500.1	Wheat	nucleus	52.76	53.65
HORVU2Hr1G064650.4	Barley	nucleus	48.07	51.03
GSMUA_Achr6P29410_001	Banana	nucleus	44.48	49.09
GSMUA_Achr9P24980_001	Banana	cytosol	43.65	47.73
OQU91463	Sorghum	nucleus	51.66	45.72
GSMUA_Achr10P...	Banana	nucleus	48.9	40.78
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	45.58	40.54
EER95414	Sorghum	nucleus	40.61	35.42
KXG36337	Sorghum	nucleus	45.3	34.38
KXG27152	Sorghum	nucleus	41.16	34.33
EES10898	Sorghum	nucleus	39.78	34.04
KXG35789	Sorghum	nucleus	41.16	34.02
KXG24662	Sorghum	nucleus	42.82	33.99
EES05289	Sorghum	plastid	40.06	33.33
EES08860	Sorghum	nucleus	25.41	20.86
EES15356	Sorghum	nucleus	24.31	19.69
EER94133	Sorghum	nucleus	14.36	14.65
EER89984	Sorghum	plastid	21.82	12.52
EES12460	Sorghum	plastid	22.93	12.5
KXG35258	Sorghum	cytosol	21.27	11.74
KXG40160	Sorghum	nucleus	22.1	11.1
KXG27463	Sorghum	nucleus	21.55	7.25

Protein Annotations

MapMan:16.9.4	Gene3D:3.30.70.330	UniProt:C5X734	EnsemblPlants:EER95718	ProteinID:EER95718	ProteinID:EER95718.2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF9	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3002G002200	SUPFAM:SSF54928	unigene:Sbi.8235	UniParc:UPI0003C6B828

Description

hypothetical protein

Coordinates

chr2:+:314164..318491

Molecular Weight (calculated)

40651.5 Da

IEP (calculated)

7.463

GRAVY (calculated)

-0.665

Length

362 amino acids

Sequence
(BLAST)

001: MASPHPLSWA DAPPFYYHGT TPQPAPDSSS DGAGPRSLWI GGLLHWMDED YLYACFTTSP ELLSVVIRRS KQTGQSEGFG FLNFADHTTA AQILKSYNGH
101: KMPNSVQDFK LNWATQQPAP DKLPDPHFKL DPAMQQDVPQ RHDDDNSSSE HFIFVGDLAY DVTEYMLHHL FKTRYASVKR AKIIVDRFTG RSKGYGFVQF
201: GDVNEQTQAL TEMNGAYCST RPMRIGPVPN KKKFSHNKQG TEPYHDNNSR LFVRQLDQSV TYEDMIQAFR PYGELIDVNI LAGKGFGFVT YSNRPSAEEA
301: IRMLNGSQLG GKAIKLSWGR SADKQAQRNS GGFGWSPQDP YAYAQTGHPG YGYYQQQLPA VQ

Best Arabidopsis Sequence Match ( AT1G11650.2 )
(BLAST)

001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY

Arabidopsis Description

RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.