CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013812_P001	Maize	nucleus	96.33	97.04
Os03t0569900-01	Rice	nucleus	86.31	87.81
GSMUA_Achr6P29410_001	Banana	nucleus	58.92	73.48
GSMUA_Achr9P24980_001	Banana	cytosol	58.92	72.81
GSMUA_Achr10P...	Banana	nucleus	70.9	66.82
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	61.12	61.43
KXG27152	Sorghum	nucleus	64.3	60.6
KXG24662	Sorghum	nucleus	64.3	57.68
KXG36337	Sorghum	nucleus	60.88	52.2
EER95718	Sorghum	nucleus	45.72	51.66
EER95414	Sorghum	nucleus	51.59	50.84
KXG35789	Sorghum	nucleus	51.83	48.4
EES10898	Sorghum	nucleus	46.21	44.68
EES05289	Sorghum	plastid	46.21	43.45
EES15356	Sorghum	nucleus	27.38	25.06
EES08860	Sorghum	nucleus	25.43	23.58
EER94133	Sorghum	nucleus	16.14	18.59
EES12460	Sorghum	plastid	23.72	14.61
EER89984	Sorghum	plastid	21.52	13.95
KXG35258	Sorghum	cytosol	22.0	13.72
KXG40160	Sorghum	nucleus	21.52	12.21
KXG27463	Sorghum	nucleus	22.49	8.55

Protein Annotations

MapMan:16.9.4	Gene3D:3.30.70.330	EntrezGene:8063033	UniProt:A0A1Z5S6A0	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlants:OQU91463
ProteinID:OQU91463	ProteinID:OQU91463.1	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF9
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3001G186100	SUPFAM:SSF54928	UniParc:UPI0001A82359
RefSeq:XP_002464324.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:15916447..15921679

Molecular Weight (calculated)

45018.3 Da

IEP (calculated)

5.181

GRAVY (calculated)

-0.845

Length

409 amino acids

Sequence
(BLAST)

001: MMQPPPPQQQ QQWAMAPPPP PQYYQAGHPP PPPPQFYQAG PPPPAMWGQP PPQAAPAPAP APSGGGAGDE ARTLWIGDLQ YWMDENYLYS CFSQAGEVIS
101: VKIIRNKQTG QPEGYGFIEF GNHALAEQVL QNYNGQMMPN VNQPFKLNWA TSGAGEKRGD DGSDYTIFVG DLASDVTDFI LQDTFKSRYP SVKSAKVVFD
201: RTTGRSKGYG FVKFADLDEQ TRAMTEMNGQ YCSSRPMRLG PASNKKNTGG QPQPSSTIYQ NTQGTDSDSD PNNTTVFVGG LDPSVTDELL KQTFSPYGEL
301: LYVKIPVGKR CGFVQYSNRA SAEEAIRMLN GSQLGGQSIR LSWGRSPANK QPQQEQNQWS GGGYYGYPQG YDPYGYARPP QDPAMYAYTP YPGYGNYQQQ
401: PPQQPPPQQ

Best Arabidopsis Sequence Match ( AT5G54900.1 )
(BLAST)

001: MQQPPSNAAG AGQIPSGQQH LWMMMQQQQQ QQQMQLSAAP LGQHQYGIGS QNPGSASDVK SLWIGDLQQW MDENYIMSVF AQSGEATSAK VIRNKLTGQS
101: EGYGFIEFVS HSVAERVLQT YNGAPMPSTE QTFRLNWAQA GAGEKRFQTE GPDHTIFVGD LAPEVTDYML SDTFKNVYGS VKGAKVVLDR TTGRSKGYGF
201: VRFADENEQM RAMTEMNGQY CSTRPMRIGP AANKNALPMQ PAMYQNTQGA NAGDNDPNNT TIFVGGLDAN VTDDELKSIF GQFGELLHVK IPPGKRCGFV
301: QYANKASAEH ALSVLNGTQL GGQSIRLSWG RSPNKQSDQA QWNGGGYYGY PPQPQGGYGY AAQPPTQDPN AYYGGYTGYG NYQQQRQ

Arabidopsis Description

RBP45APolyadenylate-binding protein RBP45A [Source:UniProtKB/Swiss-Prot;Acc:Q9FPJ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.