CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EER91121
EES07255
OQU82335

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14100.1	EER91121	AT1G16500.1	21798944
AT3G14100.1	OQU82335	AT1G16500.1	21798944
AT3G14100.1	EER88112	AT3G47620.1	21798944
AT3G14100.1	EES07255	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048824_P004	Maize	nucleus	91.16	89.93
Zm00001d026528_P001	Maize	plastid	44.22	88.64
TraesCS4B01G148600.1	Wheat	nucleus	80.27	79.55
TraesCS4D01G150600.2	Wheat	nucleus	80.73	79.29
Os11t0620100-01	Rice	nucleus	79.14	79.14
TraesCS4A01G150000.1	Wheat	mitochondrion	79.37	78.12
HORVU4Hr1G033990.7	Barley	golgi, nucleus	73.47	73.8
KRH06218	Soybean	nucleus	69.16	73.32
GSMUA_Achr6P11660_001	Banana	mitochondrion	69.39	72.34
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	68.25	72.18
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	68.48	71.9
KRH47641	Soybean	nucleus	68.71	71.8
Solyc06g063000.2.1	Tomato	nucleus	67.8	71.7
GSMUA_Achr10P...	Banana	mitochondrion	68.93	71.53
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	70.07	71.2
AT1G17370.1	Thale cress	mitochondrion, nucleus	66.44	69.93
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	66.67	69.67
CDY63384	Canola	mitochondrion, nucleus	65.53	69.14
Bra030985.1-P	Field mustard	mitochondrion, nucleus	65.53	69.14
PGSC0003DMT400058919	Potato	nucleus	65.31	69.06
Solyc03g122180.2.1	Tomato	nucleus	65.08	68.82
GSMUA_Achr11P...	Banana	nucleus	68.48	68.02
Solyc07g042180.2.1	Tomato	nucleus	61.22	67.84
PGSC0003DMT400066072	Potato	nucleus	62.81	67.56
KRH19347	Soybean	mitochondrion, nucleus	62.81	67.56
AT3G14100.1	Thale cress	nucleus	65.31	67.45
KRH02581	Soybean	mitochondrion	62.59	66.83
Bra030908.1-P	Field mustard	nucleus	63.49	66.83
CDY61476	Canola	nucleus	63.49	66.83
CDY02486	Canola	nucleus	63.49	66.67
Bra037962.1-P	Field mustard	nucleus	63.49	66.51
CDY51403	Canola	nucleus	63.27	66.43
CDY33092	Canola	nucleus	63.27	65.65
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	58.73	64.59
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	58.5	64.34
AT1G54080.2	Thale cress	nucleus	61.68	63.26
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	68.93	61.29
EES15356	Sorghum	nucleus	59.41	58.61
CDX81822	Canola	mitochondrion, nucleus	65.53	53.03
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	17.23	52.05
OQU91463	Sorghum	nucleus	23.58	25.43
EER95718	Sorghum	nucleus	20.86	25.41
KXG35789	Sorghum	nucleus	22.68	22.83
EES10898	Sorghum	nucleus	21.77	22.7
KXG36337	Sorghum	nucleus	24.49	22.64
KXG27152	Sorghum	nucleus	22.22	22.58
EES05289	Sorghum	plastid	22.22	22.53
EER95414	Sorghum	nucleus	21.09	22.41
KXG24662	Sorghum	nucleus	22.45	21.71
EER94133	Sorghum	nucleus	15.42	19.15
EES12460	Sorghum	plastid	21.09	14.01
KXG35258	Sorghum	cytosol	19.73	13.26
EER89984	Sorghum	plastid	18.14	12.68
KXG40160	Sorghum	nucleus	19.27	11.79
KXG27463	Sorghum	nucleus	26.53	10.87

Protein Annotations

MapMan:16.9.3	Gene3D:3.30.70.330	UniProt:C5Y6G8	EnsemblPlants:EES08860	ProteinID:EES08860	ProteinID:EES08860.2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR44160	PANTHER:PTHR44160:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360
SMART:SM00361	EnsemblPlantsGene:SORBI_3005G191700	SUPFAM:SSF54928	UniParc:UPI0001C80CA8	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:-:67527575..67534750

Molecular Weight (calculated)

48200.7 Da

IEP (calculated)

7.324

GRAVY (calculated)

-0.471

Length

441 amino acids

Sequence
(BLAST)

001: MHPQRMKQAA AQQQLMQQAL LLQQQQAQQP PLFPGHHHPH PGLLAAPQME PIVSGNLPPG FDSSTCRSVY VGNISLQVTD TVLQEVFQSI GPVEGCKLIR
101: KEKSSFGFID YYDRRYAALA ILSLNGRPLY GQPIKVNWAY TSTQREDTSG HFNIFVGDLC PEVTDATLFA FFSGYSTCSD ARVMWDQKTG RSRGFGFVSF
201: RNQQDAQSAI NDLNGKWLGN RQIRCNWATK GANAGEEKQI VDSKVDLTNG TSESGKENPN EDGPESNPQF TTVYVGNLPH EATNNDVHLF FHSLGAGSIE
301: EVRVTRDKGF GFVRYSTHEE AAQAIQMANG QLIGGRQIKC SWGSKPTPPG TASSPLPPPA PALFSTGVSP TDFLAYQRMA LNKMATNPSL MGQHALNQVA
401: LGMGGRASQS IYDGGFQGIS TAAATTSAQQ QQQQQQQLMY Y

Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)

001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ

Arabidopsis Description

UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.