Factsheet for TraesCS4B01G148600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G459300.1
TraesCS2A01G459400.1
TraesCS2A01G459500.1
TraesCS2B01G480800.1
TraesCS2B01G480900.1
TraesCS2B01G481200.1
TraesCS2B01G481300.1
TraesCS2D01G459600.1
TraesCS2D01G459700.1
TraesCS2D01G459800.1
TraesCS4A01G296700.1
TraesCS4B01G017000.1
TraesCS4D01G015300.1
TraesCS6A01G306500.1
TraesCS6B01G334900.1
TraesCS6D01G285600.1
TraesCS7B01G091900.1
TraesCS7D01G187600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14100.1	TraesCS2A01G459300.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2A01G459400.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2A01G459500.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2B01G480800.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2B01G480900.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2B01G481200.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2B01G481300.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2D01G459600.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2D01G459700.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2D01G459800.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS4A01G296700.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS4B01G017000.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS4D01G015300.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS6A01G306500.1	AT3G47620.1	21798944
AT3G14100.1	TraesCS6B01G334900.1	AT3G47620.1	21798944
AT3G14100.1	TraesCS6D01G285600.1	AT3G47620.1	21798944
AT3G14100.1	TraesCS7B01G091900.1	AT3G47620.1	21798944
AT3G14100.1	TraesCS7D01G187600.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G150600.2	Wheat	nucleus	97.3	96.44
TraesCS4A01G150000.1	Wheat	mitochondrion	95.96	95.31
HORVU4Hr1G033990.7	Barley	golgi, nucleus	84.94	86.1
Os11t0620100-01	Rice	nucleus	85.17	85.94
Zm00001d048824_P004	Maize	nucleus	82.7	82.33
Zm00001d026528_P001	Maize	plastid	40.45	81.82
EES08860	Sorghum	nucleus	79.55	80.27
GSMUA_Achr6P11660_001	Banana	mitochondrion	71.01	74.7
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	69.89	74.58
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	70.11	74.29
GSMUA_Achr10P...	Banana	mitochondrion	70.56	73.88
Solyc06g063000.2.1	Tomato	nucleus	69.21	73.86
KRH06218	Soybean	nucleus	68.99	73.8
AT1G17370.1	Thale cress	mitochondrion, nucleus	69.44	73.75
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	71.46	73.27
KRH47641	Soybean	nucleus	69.44	73.22
Bra030985.1-P	Field mustard	mitochondrion, nucleus	68.76	73.21
CDY63384	Canola	mitochondrion, nucleus	68.76	73.21
Solyc03g122180.2.1	Tomato	nucleus	67.64	72.18
PGSC0003DMT400058919	Potato	nucleus	67.64	72.18
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	68.09	71.8
AT3G14100.1	Thale cress	nucleus	68.54	71.43
Bra030908.1-P	Field mustard	nucleus	66.07	70.17
CDY61476	Canola	nucleus	66.07	70.17
KRH19347	Soybean	mitochondrion, nucleus	64.49	70.0
CDY02486	Canola	nucleus	66.07	70.0
PGSC0003DMT400066072	Potato	nucleus	64.27	69.76
Solyc07g042180.2.1	Tomato	nucleus	62.25	69.6
Bra037962.1-P	Field mustard	nucleus	65.84	69.6
CDY51403	Canola	nucleus	65.62	69.52
GSMUA_Achr11P...	Banana	nucleus	69.21	69.37
CDY33092	Canola	nucleus	66.07	69.18
KRH02581	Soybean	mitochondrion	64.04	69.01
TraesCS2B01G195400.1	Wheat	nucleus	65.84	68.3
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	60.9	67.58
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	60.45	67.08
AT1G54080.2	Thale cress	nucleus	64.27	66.51
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	71.24	63.91
TraesCS7B01G138700.1	Wheat	mitochondrion, nucleus	59.33	59.06
CDX81822	Canola	mitochondrion, nucleus	68.76	56.15
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	18.2	55.48
TraesCS5B01G241400.1	Wheat	nucleus	21.57	28.07
TraesCS2B01G335700.1	Wheat	plastid	22.25	23.57
TraesCS2B01G247400.4	Wheat	nucleus	24.49	23.49
TraesCS2B01G495700.1	Wheat	nucleus	21.35	21.79
TraesCS6B01G228100.1	Wheat	endoplasmic reticulum, plastid, vacuole	22.25	21.71
TraesCS4B01G289600.1	Wheat	nucleus	22.25	21.57
TraesCS6B01G128900.2	Wheat	plastid	19.55	20.86
TraesCS7B01G199000.1	Wheat	nucleus, plastid	19.33	20.43
TraesCS1B01G160900.1	Wheat	nucleus	16.4	19.84
TraesCS2B01G378400.1	Wheat	nucleus	22.02	14.74
TraesCS5B01G159400.1	Wheat	cytosol	19.33	13.21
TraesCS3B01G090800.1	Wheat	mitochondrion	18.43	13.12
TraesCS7B01G182800.3	Wheat	cytosol	19.78	13.04
TraesCS2B01G599000.1	Wheat	nucleus	27.42	12.54
TraesCS4B01G204800.1	Wheat	cytosol	18.2	12.44
TraesCS2B01G601400.1	Wheat	nucleus	26.07	12.11
TraesCS2B01G598800.1	Wheat	nucleus	25.84	10.98

Protein Annotations

MapMan:16.9.3	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44160	PANTHER:PTHR44160:SF2
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928
EnsemblPlantsGene:TraesCS4B01G148600	EnsemblPlants:TraesCS4B01G148600.1	TIGR:cd12352	TIGR:cd12354	TIGR:cd12619	SEG:seg

Description

No Description!

Coordinates

chr4B:+:215916991..215924327

Molecular Weight (calculated)

48544.1 Da

IEP (calculated)

7.211

GRAVY (calculated)

-0.425

Length

445 amino acids

Sequence
(BLAST)

001: MQQRMKQAAA VAAQQQQQQM MQQALLMHHQ QQQQQAAAAV PPMFPPHHAH PGLLAAPHIE PIVSGNLPPG FDSSTCRSVY VGNIHLQVTD SLLHEVFQSI
101: GPVEGCKLIR KEKSSFGFVD YYDRRYAALA IVSLNGRQLF GQPIKVNWAY ASTQREDTSG HFNIFVGDLC PEVTDAALFA FFSAYSTSSD ARVMWDQQTG
201: RSRGFGFVSF RNQQDAQTAI NELNGKWLGN RQIRCNWATK GANAGEEKQS TDSKGVVELI NGSSEPGKEN ANEDGPENNP QYTTVYVGNL PHDINSNDVH
301: RFFHLLGAGS IEEVRVTRDK GFGFVRYSTH EEAAQAIQTG NGQFIGGRQI KCSWGSKPTP PGTASAPLPP PALAPYTPGV SAVDLISYER SLALSKMAAN
401: QALMGQHAAL RQAAMGMGAG ASQAIFDGGF QSVNPQQQQQ QLMYY

Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)

001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ

Arabidopsis Description

UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.