Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- mitochondrion 3
- nucleus 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030908.1-P | Field mustard | nucleus | 87.21 | 89.5 |
| CDY33092 | Canola | nucleus | 88.14 | 89.18 |
| Bra037962.1-P | Field mustard | nucleus | 87.21 | 89.07 |
| CDY51403 | Canola | nucleus | 86.98 | 89.05 |
| CDY02486 | Canola | nucleus | 86.98 | 89.05 |
| CDY61476 | Canola | nucleus | 86.74 | 89.02 |
| AT3G14100.1 | Thale cress | nucleus | 83.49 | 84.07 |
| AT1G17370.1 | Thale cress | mitochondrion, nucleus | 74.88 | 76.85 |
| PGSC0003DMT400012431 | Potato | mitochondrion, nucleus | 73.26 | 75.54 |
| Solyc06g063000.2.1 | Tomato | nucleus | 73.26 | 75.54 |
| PGSC0003DMT400058919 | Potato | nucleus | 71.4 | 73.62 |
| Solyc03g122180.2.1 | Tomato | nucleus | 71.16 | 73.38 |
| GSMUA_Achr6P11660_001 | Banana | mitochondrion | 68.37 | 69.5 |
| GSMUA_Achr3P02150_001 | Banana | mitochondrion, nucleus | 68.84 | 68.2 |
| GSMUA_Achr10P... | Banana | mitochondrion | 66.51 | 67.29 |
| GSMUA_Achr11P... | Banana | nucleus | 66.74 | 64.64 |
| TraesCS4B01G148600.1 | Wheat | nucleus | 66.51 | 64.27 |
| Os11t0620100-01 | Rice | nucleus | 65.81 | 64.17 |
| Os07t0615400-01 | Rice | nucleus | 63.72 | 64.17 |
| TraesCS4D01G150600.2 | Wheat | nucleus | 65.58 | 62.81 |
| TraesCS4A01G150000.1 | Wheat | mitochondrion | 64.88 | 62.28 |
| Zm00001d048824_P004 | Maize | nucleus | 64.65 | 62.19 |
| TraesCS2D01G176700.1 | Wheat | nucleus | 61.4 | 61.97 |
| TraesCS2A01G169100.1 | Wheat | nucleus | 61.63 | 61.92 |
| TraesCS2B01G195400.1 | Wheat | nucleus | 61.63 | 61.77 |
| EES08860 | Sorghum | nucleus | 63.26 | 61.68 |
| HORVU4Hr1G033990.7 | Barley | golgi, nucleus | 62.09 | 60.82 |
| Zm00001d026528_P001 | Maize | plastid | 30.93 | 60.45 |
| GSMUA_Achr2P21780_001 | Banana | nucleus, plastid | 67.91 | 58.87 |
| VIT_04s0043g01000.t01 | Wine grape | cytosol, extracellular, mitochondrion | 18.84 | 55.48 |
| HORVU2Hr1G031260.2 | Barley | nucleus, plastid | 61.63 | 53.32 |
| Zm00001d026522_P001 | Maize | nucleus | 29.77 | 52.46 |
| AT4G27000.1 | Thale cress | nucleus | 26.05 | 26.99 |
| AT1G11650.2 | Thale cress | nucleus | 24.88 | 26.42 |
| AT5G54900.1 | Thale cress | nucleus | 23.49 | 26.1 |
| AT3G19130.1 | Thale cress | nucleus | 24.19 | 23.91 |
| AT1G47490.1 | Thale cress | nucleus | 23.72 | 23.61 |
| AT1G49600.3 | Thale cress | nucleus | 24.65 | 23.56 |
| AT1G47500.1 | Thale cress | nucleus | 23.02 | 22.81 |
| AT5G19350.1 | Thale cress | cytosol | 22.33 | 22.59 |
| AT2G18510.1 | Thale cress | nucleus | 16.05 | 19.01 |
| AT1G34140.1 | Thale cress | nucleus | 14.88 | 15.72 |
| AT1G49760.1 | Thale cress | cytosol | 24.19 | 15.5 |
| AT4G34110.1 | Thale cress | cytosol | 22.56 | 15.42 |
| AT3G16380.1 | Thale cress | nucleus | 18.37 | 14.71 |
| AT2G23350.1 | Thale cress | nucleus | 22.33 | 14.5 |
| AT2G36660.1 | Thale cress | cytosol, plastid | 20.0 | 14.12 |
| AT1G22760.1 | Thale cress | nucleus, plastid | 20.0 | 13.03 |
| AT1G71770.1 | Thale cress | cytosol, plastid | 18.84 | 11.88 |
Protein Annotations
| MapMan:16.9.3 | Gene3D:3.30.70.330 | EntrezGene:841846 | ProteinID:AEE33044.1 | ArrayExpress:AT1G54080 | EnsemblPlantsGene:AT1G54080 |
| RefSeq:AT1G54080 | TAIR:AT1G54080 | RefSeq:AT1G54080-TAIR-G | EnsemblPlants:AT1G54080.2 | TAIR:AT1G54080.2 | Unigene:At.23098 |
| UniProt:F4HV67 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 | InterPro:IPR000504 | InterPro:IPR012677 |
| RefSeq:NP_849806.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS50102 | PANTHER:PTHR44160 | PANTHER:PTHR44160:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | Symbol:UBP1A | UniParc:UPI000019709D | SEG:seg | : | : |
Description
UBP1AOligouridylate-binding protein 1A [Source:UniProtKB/TrEMBL;Acc:F4HV67]
Coordinates
chr1:-:20183581..20186909
Molecular Weight (calculated)
47806.3 Da
IEP (calculated)
7.384
GRAVY (calculated)
-0.526
Length
430 amino acids
Sequence
(BLAST)
(BLAST)
001: MQNQRLIKQQ QQQQQQQHQQ AMIQQAMMQQ HPSLYHPGVM APPQMEPLPS GNLPPGFDPT TCRSVYAGNI HTQVTEILLQ EIFASTGPIE SCKLIRKDKS
101: SYGFVHYFDR RCASMAIMTL NGRHIFGQPM KVNWAYATGQ REDTSSHFNI FVGDLSPEVT DAALFDSFSA FNSCSSYYRD ARVMWDQKTG RSRGFGFVSF
201: RNQQDAQTAI NEMNGKWVSS RQIRCNWATK GATFGEDKHS SDGKSVVELT NGSSEDGREL SNEDAPENNP QFTTVYVGNL SPEVTQLDLH RLFYTLGAGV
301: IEEVRVQRDK GFGFVRYNTH DEAALAIQMG NAQPFLFSRQ IRCSWGNKPT PSGTASNPLP PPAPASVPSL SAMDLLAYER QLALAKMHPQ AQHSLRQAGL
401: GVNVAGGTAA MYDGGYQNVA AAHQQLMYYQ
101: SYGFVHYFDR RCASMAIMTL NGRHIFGQPM KVNWAYATGQ REDTSSHFNI FVGDLSPEVT DAALFDSFSA FNSCSSYYRD ARVMWDQKTG RSRGFGFVSF
201: RNQQDAQTAI NEMNGKWVSS RQIRCNWATK GATFGEDKHS SDGKSVVELT NGSSEDGREL SNEDAPENNP QFTTVYVGNL SPEVTQLDLH RLFYTLGAGV
301: IEEVRVQRDK GFGFVRYNTH DEAALAIQMG NAQPFLFSRQ IRCSWGNKPT PSGTASNPLP PPAPASVPSL SAMDLLAYER QLALAKMHPQ AQHSLRQAGL
401: GVNVAGGTAA MYDGGYQNVA AAHQQLMYYQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.