Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34835 | Canola | nucleus | 84.94 | 87.53 |
| Bra031774.1-P | Field mustard | nucleus | 84.44 | 86.8 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 85.68 | 68.44 |
| KRH20867 | Soybean | nucleus | 66.17 | 65.53 |
| KRH11417 | Soybean | nucleus | 65.68 | 64.72 |
| KRH51075 | Soybean | endoplasmic reticulum | 62.96 | 64.23 |
| KRH02082 | Soybean | nucleus | 63.46 | 63.93 |
| Solyc10g005260.2.1 | Tomato | nucleus | 62.47 | 61.56 |
| PGSC0003DMT400029379 | Potato | nucleus | 60.74 | 61.5 |
| Solyc03g031720.2.1 | Tomato | nucleus | 60.0 | 60.0 |
| PGSC0003DMT400013036 | Potato | nucleus | 58.77 | 59.5 |
| TraesCS7A01G295700.3 | Wheat | plastid | 45.68 | 59.49 |
| AT4G27000.1 | Thale cress | nucleus | 59.75 | 58.31 |
| Solyc02g080420.2.1 | Tomato | extracellular, nucleus, plastid | 59.26 | 58.11 |
| PGSC0003DMT400042504 | Potato | nucleus | 58.27 | 57.14 |
| AT5G54900.1 | Thale cress | nucleus | 53.83 | 56.33 |
| TraesCS6D01G081700.2 | Wheat | plastid | 56.79 | 56.1 |
| TraesCS6A01G100800.1 | Wheat | nucleus | 56.79 | 56.1 |
| Os08t0190200-00 | Rice | nucleus | 60.74 | 55.66 |
| KXG27152 | Sorghum | nucleus | 59.01 | 55.07 |
| Zm00001d026346_P002 | Maize | extracellular | 58.02 | 54.91 |
| TraesCS6B01G128900.2 | Wheat | plastid | 56.05 | 54.44 |
| Os04t0625800-01 | Rice | nucleus | 57.04 | 54.35 |
| TraesCS7B01G199000.1 | Wheat | nucleus, plastid | 56.3 | 54.16 |
| TraesCS2D01G472700.1 | Wheat | nucleus | 58.27 | 54.13 |
| TraesCS2B01G495700.1 | Wheat | nucleus | 58.27 | 54.13 |
| TraesCS2A01G473000.1 | Wheat | nucleus | 58.27 | 54.13 |
| Zm00001d049416_P001 | Maize | extracellular, nucleus | 60.49 | 53.73 |
| KXG24662 | Sorghum | nucleus | 60.49 | 53.73 |
| Zm00001d002244_P003 | Maize | nucleus | 59.01 | 53.35 |
| HORVU2Hr1G106810.1 | Barley | nucleus | 53.83 | 47.19 |
| HORVU7Hr1G066510.3 | Barley | plastid | 50.62 | 46.91 |
| AT1G47500.1 | Thale cress | nucleus | 49.14 | 45.85 |
| AT5G19350.1 | Thale cress | cytosol | 47.9 | 45.65 |
| AT1G47490.1 | Thale cress | nucleus | 47.41 | 44.44 |
| AT3G19130.1 | Thale cress | nucleus | 45.19 | 42.07 |
| AT1G49600.3 | Thale cress | nucleus | 46.17 | 41.56 |
| AT1G54080.2 | Thale cress | nucleus | 26.42 | 24.88 |
| AT1G17370.1 | Thale cress | mitochondrion, nucleus | 25.68 | 24.82 |
| AT3G14100.1 | Thale cress | nucleus | 24.69 | 23.42 |
| AT2G18510.1 | Thale cress | nucleus | 15.06 | 16.8 |
| AT4G34110.1 | Thale cress | cytosol | 24.44 | 15.74 |
| AT1G34140.1 | Thale cress | nucleus | 14.81 | 14.74 |
| AT2G23350.1 | Thale cress | nucleus | 23.46 | 14.35 |
| AT1G49760.1 | Thale cress | cytosol | 23.46 | 14.16 |
| AT1G22760.1 | Thale cress | nucleus, plastid | 22.96 | 14.09 |
| AT3G16380.1 | Thale cress | nucleus | 17.78 | 13.41 |
| AT2G36660.1 | Thale cress | cytosol, plastid | 20.0 | 13.3 |
| AT1G71770.1 | Thale cress | cytosol, plastid | 21.23 | 12.61 |
| VIT_18s0001g10190.t01 | Wine grape | cytosol, mitochondrion | 2.47 | 8.0 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | EntrezGene:837708 | UniProt:A0A178WLD6 | ProteinID:AAD30259.1 | ProteinID:AEE28764.1 |
| ProteinID:AEE28765.1 | EMBL:AK318868 | ArrayExpress:AT1G11650 | EnsemblPlantsGene:AT1G11650 | RefSeq:AT1G11650 | TAIR:AT1G11650 |
| RefSeq:AT1G11650-TAIR-G | EnsemblPlants:AT1G11650.2 | TAIR:AT1G11650.2 | Symbol:ATRBP45B | EMBL:AY086969 | EMBL:AY093201 |
| Unigene:At.19842 | EMBL:BT008494 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0006950 | GO:GO:0008143 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009719 |
| GO:GO:0009735 | GO:GO:0009987 | GO:GO:0010193 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_172630.1 |
| RefSeq:NP_849641.1 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAP19006.1 | PFAM:PF00076 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF8 | UniProt:Q9SAB3 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000009F50D | SEG:seg | : | : | : | : |
Description
RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
Coordinates
chr1:+:3914774..3918243
Molecular Weight (calculated)
44117.3 Da
IEP (calculated)
5.661
GRAVY (calculated)
-0.584
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.