Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G472700.1 | Wheat | nucleus | 74.89 | 79.36 |
| TraesCS2B01G495700.1 | Wheat | nucleus | 74.46 | 78.9 |
| TraesCS2A01G473000.1 | Wheat | nucleus | 74.46 | 78.9 |
| Os04t0625800-01 | Rice | nucleus | 64.29 | 69.88 |
| KXG27152 | Sorghum | nucleus | 63.85 | 67.97 |
| Zm00001d026346_P002 | Maize | extracellular | 62.77 | 67.76 |
| Zm00001d002244_P003 | Maize | nucleus | 63.2 | 65.18 |
| KRH51075 | Soybean | endoplasmic reticulum | 49.57 | 57.68 |
| KRH02082 | Soybean | nucleus | 49.78 | 57.21 |
| HORVU7Hr1G066510.3 | Barley | plastid | 53.68 | 56.75 |
| KRH20867 | Soybean | nucleus | 50.22 | 56.72 |
| KRH11417 | Soybean | nucleus | 49.78 | 55.96 |
| PGSC0003DMT400013036 | Potato | nucleus | 47.84 | 55.25 |
| Solyc03g031720.2.1 | Tomato | nucleus | 48.27 | 55.06 |
| PGSC0003DMT400029379 | Potato | nucleus | 47.62 | 55.0 |
| Solyc10g005260.2.1 | Tomato | nucleus | 48.05 | 54.01 |
| AT1G11650.2 | Thale cress | nucleus | 47.19 | 53.83 |
| CDY34835 | Canola | nucleus | 45.02 | 52.93 |
| Bra031774.1-P | Field mustard | nucleus | 44.59 | 52.28 |
| Solyc02g080420.2.1 | Tomato | extracellular, nucleus, plastid | 46.32 | 51.82 |
| PGSC0003DMT400042504 | Potato | nucleus | 45.89 | 51.33 |
| HORVU2Hr1G046380.2 | Barley | nucleus | 47.4 | 49.66 |
| HORVU4Hr1G075700.5 | Barley | nucleus | 44.59 | 49.52 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 41.34 | 44.73 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 39.39 | 43.65 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 40.69 | 43.42 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 45.02 | 41.03 |
| HORVU2Hr1G064650.4 | Barley | nucleus | 25.32 | 34.31 |
| HORVU7Hr1G052090.3 | Barley | nucleus | 22.29 | 20.85 |
| HORVU4Hr1G033990.7 | Barley | golgi, nucleus | 18.83 | 19.82 |
| HORVU2Hr1G031260.2 | Barley | nucleus, plastid | 20.78 | 19.32 |
| HORVU1Hr1G038240.1 | Barley | nucleus | 12.34 | 15.49 |
| HORVU2Hr1G087390.3 | Barley | cytosol, mitochondrion, nucleus | 18.83 | 14.24 |
| HORVU7Hr1G063970.1 | Barley | cytosol, nucleus, plastid | 20.56 | 13.27 |
| HORVU5Hr1G050560.1 | Barley | plastid | 19.26 | 12.68 |
| HORVU4Hr1G059070.1 | Barley | cytosol | 16.67 | 11.77 |
| HORVU2Hr1G122920.2 | Barley | nucleus | 17.97 | 8.2 |
| HORVU2Hr1G123110.1 | Barley | nucleus, plastid | 18.61 | 8.09 |
| VIT_18s0001g10190.t01 | Wine grape | cytosol, mitochondrion | 1.08 | 4.0 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G106810.1 | EnsemblPlantsGene:HORVU2Hr1G106810 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR43955 | PANTHER:PTHR43955:SF3 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000B47F33B | UniProt:A0A287JBX4 | MapMan:16.9.4 | : | : |
Description
No Description!
Coordinates
chrchr2H:+:710599715..710603056
Molecular Weight (calculated)
38032.5 Da
IEP (calculated)
6.285
GRAVY (calculated)
-0.437
Length
462 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
101: XXXXXXXXXX XXXXXVRTLW IGDLQYWMDE NYIYSCFANT GEFQSVKLIR DKQTGQLQGY GFVEFASHAA AERVLQTFNG QMMPNVELAY RLNWASAGEK
201: RDDTPDYTIF VGDLAADVTD YMLQETFRVH YPSVKGAKVV TDKMTMRSKG YGFVKFGDPT EQARAMTEMN GMPCSSRPMR IGPAANRKTT GVQERVPIPN
301: TNTQGAQSDN DPNNTTIFVG GLDPNVTEDA LKQVFAPYGD VVHVKIPVGK RCGFVQYANR PSAEQALQLL QGTLVGGQNV RLSWGRSPSN KQTQPQEATQ
401: WGAGAAAGAA GGYYAGYGQG YEAYGQGYAQ PQDPNMYGYG AYAGYPNYQQ PAAAPQPPPP QQ
101: XXXXXXXXXX XXXXXVRTLW IGDLQYWMDE NYIYSCFANT GEFQSVKLIR DKQTGQLQGY GFVEFASHAA AERVLQTFNG QMMPNVELAY RLNWASAGEK
201: RDDTPDYTIF VGDLAADVTD YMLQETFRVH YPSVKGAKVV TDKMTMRSKG YGFVKFGDPT EQARAMTEMN GMPCSSRPMR IGPAANRKTT GVQERVPIPN
301: TNTQGAQSDN DPNNTTIFVG GLDPNVTEDA LKQVFAPYGD VVHVKIPVGK RCGFVQYANR PSAEQALQLL QGTLVGGQNV RLSWGRSPSN KQTQPQEATQ
401: WGAGAAAGAA GGYYAGYGQG YEAYGQGYAQ PQDPNMYGYG AYAGYPNYQQ PAAAPQPPPP QQ
001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY
Arabidopsis Description
RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.