Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26579155
|
msms PMID:
26579155
doi
Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G473000.1 | Wheat | nucleus | 99.54 | 99.54 |
| TraesCS2B01G495700.1 | Wheat | nucleus | 99.54 | 99.54 |
| Os04t0625800-01 | Rice | nucleus | 84.17 | 86.35 |
| KXG27152 | Sorghum | nucleus | 82.57 | 82.95 |
| Zm00001d026346_P002 | Maize | extracellular | 81.19 | 82.71 |
| Zm00001d002244_P003 | Maize | nucleus | 82.8 | 80.58 |
| TraesCS6D01G081700.2 | Wheat | plastid | 70.64 | 75.12 |
| HORVU2Hr1G106810.1 | Barley | nucleus | 79.36 | 74.89 |
| KRH20867 | Soybean | nucleus | 60.32 | 64.3 |
| KRH11417 | Soybean | nucleus | 59.17 | 62.77 |
| KRH51075 | Soybean | endoplasmic reticulum | 56.65 | 62.22 |
| KRH02082 | Soybean | nucleus | 57.11 | 61.94 |
| Solyc03g031720.2.1 | Tomato | nucleus | 55.5 | 59.75 |
| PGSC0003DMT400013036 | Potato | nucleus | 54.13 | 59.0 |
| Solyc10g005260.2.1 | Tomato | nucleus | 55.5 | 58.88 |
| PGSC0003DMT400029379 | Potato | nucleus | 53.9 | 58.75 |
| AT1G11650.2 | Thale cress | nucleus | 54.13 | 58.27 |
| CDY34835 | Canola | nucleus | 52.06 | 57.76 |
| Bra031774.1-P | Field mustard | nucleus | 51.61 | 57.11 |
| Solyc02g080420.2.1 | Tomato | extracellular, nucleus, plastid | 53.9 | 56.9 |
| PGSC0003DMT400042504 | Potato | nucleus | 52.98 | 55.93 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 43.58 | 55.56 |
| TraesCS2D01G227900.5 | Wheat | nucleus | 55.5 | 52.16 |
| TraesCS2D01G315400.2 | Wheat | plastid | 45.87 | 47.17 |
| TraesCS4D01G288600.1 | Wheat | nucleus | 49.08 | 46.83 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 44.5 | 46.52 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 51.83 | 44.58 |
| TraesCS2D01G266400.1 | Wheat | nucleus | 33.95 | 41.57 |
| TraesCS2D01G176700.1 | Wheat | nucleus | 24.31 | 24.88 |
| TraesCS7D01G250300.1 | Wheat | mitochondrion, nucleus | 24.54 | 23.94 |
| TraesCS4D01G150600.2 | Wheat | nucleus | 20.87 | 20.27 |
| TraesCS1D01G142300.1 | Wheat | nucleus | 13.53 | 16.03 |
| TraesCS3D01G076800.1 | Wheat | mitochondrion | 8.72 | 15.26 |
| TraesCS7D01G287900.1 | Wheat | cytosol | 21.56 | 14.73 |
| TraesCS3D01G076700.1 | Wheat | mitochondrion | 14.91 | 14.61 |
| TraesCS5D01G167000.1 | Wheat | nucleus, unclear | 21.33 | 14.29 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 21.56 | 14.16 |
| TraesCS4D01G205700.1 | Wheat | cytosol | 19.95 | 13.32 |
| TraesCS2D01G593700.1 | Wheat | nucleus | 21.1 | 9.48 |
| TraesCS2D01G594800.1 | Wheat | nucleus | 20.64 | 9.41 |
| TraesCS2D01G593900.1 | Wheat | nucleus | 20.87 | 8.88 |
| VIT_18s0001g10190.t01 | Wine grape | cytosol, mitochondrion | 1.38 | 4.8 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G472700.1 | EnsemblPlantsGene:TraesCS2D01G472700 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF3 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd12344 | TIGR:cd12345 | TIGR:cd12346 | MapMan:16.9.4 | : | : |
Description
No Description!
Coordinates
chr2D:+:576279443..576282543
Molecular Weight (calculated)
47250.4 Da
IEP (calculated)
6.042
GRAVY (calculated)
-0.652
Length
436 amino acids
Sequence
(BLAST)
(BLAST)
001: MMQPPPPSQP QPGMGAPMPP QGAGGQPPHW GAIPPPMPHY AQPPPQQQPP PQAMWGQPPP QAAPYGQVPA PQQYYAAPQA PAAPAASDEV RTLWIGDLQY
101: WMDENYIYSC FANTGEFQSV KLIRDKQTGQ LQGYGFVEFA SHAAAERVLQ TFNGQMMPNV ELAYRLNWAS AGEKRDDTPD YTIFVGDLAA DVTDYMLQET
201: FRVHYPSVKG AKVVTDKMTM RSKGYGFVKF GDPTEQARAM TEMNGMPCSS RPMRIGPAAN RKTTGVQERV PIPNTNTQGA QSDNDPNNTT IFVGGLDPNV
301: TEDALKQVFA PYGEVVHVKI PVGKRCGFVQ YANRPSAEQA LQLLQGTLVG GQNVRLSWGR SPSNKQTQPQ EATQWGAGAA AGAAGGYYAG YGQGYEAYGQ
401: GYAQPQDPNM YGYGAYAGYP NYQQPAAAPQ PPPPQQ
101: WMDENYIYSC FANTGEFQSV KLIRDKQTGQ LQGYGFVEFA SHAAAERVLQ TFNGQMMPNV ELAYRLNWAS AGEKRDDTPD YTIFVGDLAA DVTDYMLQET
201: FRVHYPSVKG AKVVTDKMTM RSKGYGFVKF GDPTEQARAM TEMNGMPCSS RPMRIGPAAN RKTTGVQERV PIPNTNTQGA QSDNDPNNTT IFVGGLDPNV
301: TEDALKQVFA PYGEVVHVKI PVGKRCGFVQ YANRPSAEQA LQLLQGTLVG GQNVRLSWGR SPSNKQTQPQ EATQWGAGAA AGAAGGYYAG YGQGYEAYGQ
401: GYAQPQDPNM YGYGAYAGYP NYQQPAAAPQ PPPPQQ
001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY
Arabidopsis Description
RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.