Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- plastid 2
- nucleus 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
23303719
plastid: 27992503 |
msms PMID:
23303719
doi
State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG27152 | Sorghum | nucleus | 88.0 | 86.18 |
| Zm00001d026346_P002 | Maize | extracellular | 85.18 | 84.58 |
| TraesCS2D01G472700.1 | Wheat | nucleus | 86.35 | 84.17 |
| TraesCS2B01G495700.1 | Wheat | nucleus | 86.12 | 83.94 |
| TraesCS2A01G473000.1 | Wheat | nucleus | 86.12 | 83.94 |
| Zm00001d002244_P003 | Maize | nucleus | 87.29 | 82.81 |
| Os08t0190200-00 | Rice | nucleus | 78.82 | 75.79 |
| KRH20867 | Soybean | nucleus | 63.76 | 66.26 |
| Os03t0569900-01 | Rice | nucleus | 61.41 | 64.93 |
| KRH11417 | Soybean | nucleus | 62.59 | 64.72 |
| KRH51075 | Soybean | endoplasmic reticulum | 60.24 | 64.48 |
| HORVU2Hr1G106810.1 | Barley | nucleus | 69.88 | 64.29 |
| KRH02082 | Soybean | nucleus | 60.0 | 63.43 |
| Solyc03g031720.2.1 | Tomato | nucleus | 57.88 | 60.74 |
| PGSC0003DMT400013036 | Potato | nucleus | 56.24 | 59.75 |
| PGSC0003DMT400029379 | Potato | nucleus | 56.0 | 59.5 |
| Solyc10g005260.2.1 | Tomato | nucleus | 57.41 | 59.37 |
| Solyc02g080420.2.1 | Tomato | extracellular, nucleus, plastid | 56.94 | 58.6 |
| CDY34835 | Canola | nucleus | 53.65 | 58.02 |
| PGSC0003DMT400042504 | Potato | nucleus | 56.0 | 57.63 |
| AT1G11650.2 | Thale cress | nucleus | 54.35 | 57.04 |
| Bra031774.1-P | Field mustard | nucleus | 52.71 | 56.85 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 33.18 | 54.44 |
| Os07t0516900-01 | Rice | plastid | 32.0 | 54.18 |
| Os03t0174100-02 | Rice | nucleus | 49.18 | 50.24 |
| Os04t0449900-01 | Rice | plastid | 43.06 | 47.29 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 53.65 | 44.97 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 44.47 | 42.86 |
| Os07t0615400-01 | Rice | nucleus | 26.35 | 26.23 |
| Os08t0520300-01 | Rice | nucleus | 26.35 | 25.06 |
| Os11t0620100-01 | Rice | nucleus | 24.0 | 23.13 |
| Os10t0457000-01 | Rice | nucleus | 14.35 | 17.18 |
| Os09t0115400-01 | Rice | nucleus | 24.0 | 15.41 |
| Os04t0504800-01 | Rice | plasma membrane | 23.76 | 15.33 |
| Os08t0314800-02 | Rice | cytosol, nucleus, plasma membrane | 23.29 | 15.0 |
| Os03t0278500-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 19.06 | 12.52 |
| Os04t0682400-01 | Rice | nucleus | 20.47 | 8.63 |
| Os06t0589700-01 | Rice | cytosol, extracellular | 7.53 | 8.02 |
| VIT_18s0001g10190.t01 | Wine grape | cytosol, mitochondrion | 2.12 | 7.2 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | EntrezGene:4337064 | EMBL:AK120834 | ProteinID:BAF15855.1 | ProteinID:BAS91113.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os04g0625800 | EnsemblPlants:Os04t0625800-01 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF3 | UniProt:Q0J9Y2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0000DD92A8 | RefSeq:XP_015636969.1 | SEG:seg | : | : | : |
Description
Similar to RNA Binding Protein 45. (Os04t0625800-01);Non-protein coding transcript. (Os04t0625800-02)
Coordinates
chr4:+:31819464..31823462
Molecular Weight (calculated)
46198.4 Da
IEP (calculated)
6.364
GRAVY (calculated)
-0.645
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQPPSQPQP GMGGPPPPPQ GAAGQPPQWG AIPPPMPPHQ YGAPPPQQPP AMWGQPPPQA HYGQVPPPQP YYAAPPPQAM PAPAAADEVK TLWIGDLQPW
101: MDESYIYNCF AATGEVQSVK LIRDKQSGQL QGYGFVEFTS RAAADRILQT YNGQMMPNVE MVFRLNWASA GEKRDDTPDY TIFVGDLAAD VTDYLLQETF
201: RVHYPSVKGA KVVTDKMTMR SKGYGFVKFG DPTEQARAMT EMNGMLCSSR PMRIGPAANK KTTGVQERVP NAQGAQSEND PNNTTIFVGG LDPNVTEDVL
301: KQVFAPYGEV VHVKIPVGKR CGFVQYVNRP SAEQALAVLQ GTLIGGQNVR LSWGRSLSNK QPQHDSNQWG AGAGAGGYYG GYGQGYEAYG GYAQPQDPNM
401: YGYGAYAGYP NYQQQQVAQQ QPPQQ
101: MDESYIYNCF AATGEVQSVK LIRDKQSGQL QGYGFVEFTS RAAADRILQT YNGQMMPNVE MVFRLNWASA GEKRDDTPDY TIFVGDLAAD VTDYLLQETF
201: RVHYPSVKGA KVVTDKMTMR SKGYGFVKFG DPTEQARAMT EMNGMLCSSR PMRIGPAANK KTTGVQERVP NAQGAQSEND PNNTTIFVGG LDPNVTEDVL
301: KQVFAPYGEV VHVKIPVGKR CGFVQYVNRP SAEQALAVLQ GTLIGGQNVR LSWGRSLSNK QPQHDSNQWG AGAGAGGYYG GYGQGYEAYG GYAQPQDPNM
401: YGYGAYAGYP NYQQQQVAQQ QPPQQ
001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY
Arabidopsis Description
RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.