Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95414 | Sorghum | nucleus | 87.26 | 87.47 |
| TraesCS4A01G014200.1 | Wheat | nucleus | 86.78 | 86.78 |
| HORVU4Hr1G075700.5 | Barley | nucleus | 86.54 | 86.54 |
| TraesCS4D01G288600.1 | Wheat | nucleus | 86.78 | 78.99 |
| TraesCS4B01G289600.1 | Wheat | nucleus | 86.78 | 78.65 |
| GSMUA_Achr8P31320_001 | Banana | nucleus | 67.31 | 70.0 |
| PGSC0003DMT400018998 | Potato | nucleus | 69.71 | 69.38 |
| Solyc11g065880.1.1 | Tomato | nucleus | 68.99 | 68.82 |
| KRH23136 | Soybean | cytosol | 68.51 | 68.02 |
| VIT_06s0004g02040.t01 | Wine grape | nucleus | 72.6 | 67.87 |
| KRH29709 | Soybean | cytosol | 64.18 | 66.58 |
| KRH24702 | Soybean | nucleus | 62.98 | 65.34 |
| AT5G19350.1 | Thale cress | cytosol | 66.59 | 65.18 |
| CDY13992 | Canola | nucleus | 63.46 | 63.01 |
| CDX92537 | Canola | nucleus | 63.46 | 63.01 |
| Bra002230.1-P | Field mustard | nucleus | 63.22 | 62.77 |
| KRH10201 | Soybean | mitochondrion, nucleus, plastid | 43.51 | 61.56 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 62.98 | 60.93 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 62.98 | 60.93 |
| Bra006502.1-P | Field mustard | nucleus | 62.74 | 60.7 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 33.65 | 54.05 |
| Os03t0569900-01 | Rice | nucleus | 49.76 | 51.49 |
| Os04t0625800-01 | Rice | nucleus | 50.24 | 49.18 |
| Os08t0190200-00 | Rice | nucleus | 51.2 | 48.19 |
| Os07t0516900-01 | Rice | plastid | 28.37 | 47.01 |
| Os04t0449900-01 | Rice | plastid | 42.31 | 45.48 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 46.39 | 43.76 |
| Zm00001d027869_P002 | Maize | nucleus | 65.62 | 35.78 |
| Os07t0615400-01 | Rice | nucleus | 23.32 | 22.72 |
| Os08t0520300-01 | Rice | nucleus | 23.32 | 21.7 |
| Os11t0620100-01 | Rice | nucleus | 22.12 | 20.86 |
| Os10t0457000-01 | Rice | nucleus | 15.14 | 17.75 |
| Os08t0314800-02 | Rice | cytosol, nucleus, plasma membrane | 22.6 | 14.24 |
| Os09t0115400-01 | Rice | nucleus | 22.36 | 14.05 |
| Os04t0504800-01 | Rice | plasma membrane | 22.12 | 13.96 |
| Os03t0278500-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 21.15 | 13.6 |
| Os06t0589700-01 | Rice | cytosol, extracellular | 9.86 | 10.28 |
| Os04t0682400-01 | Rice | nucleus | 17.79 | 7.34 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | EntrezGene:4331788 | ProteinID:ABF94248.1 | EMBL:AK065337 | ProteinID:BAS82561.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os03g0174100 | EnsemblPlants:Os03t0174100-02 | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR43955 | PANTHER:PTHR43955:SF8 | UniProt:Q10R21 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0000DB44DC | RefSeq:XP_015632746.1 | SEG:seg | : | : |
Description
Similar to RNA Binding Protein 45. (Os03t0174100-01);Similar to RNA Binding Protein 45. (Os03t0174100-02)
Coordinates
chr3:+:3970241..3974508
Molecular Weight (calculated)
46058.7 Da
IEP (calculated)
5.252
GRAVY (calculated)
-0.481
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAPYHQPT SLEEVRTLWI GDLQYWADEN YLYNCFAHTG ELQSVKIIRN KLTSLPEGYG FIEFISHEVA EKVLQTYNGT QMPGTEHTFR LNWASFSSGE
101: RRPDAGPDHS IFVGDLAPDV TDYLLQETFR VSYPSVKGAK VVTDPNTGRS KGYGFVKFAD ENEKNRAMTE MNGMYCSTRP MRISAAIPKK TTGSQLQYGA
201: AKAMYPAAGY AVPQVQPVLP DSDPTNTTIF IGNLDQNVTE DELRQICVQF GELIYVKIPA NKACGFVQYA SRASAEEAVQ RLHGTTIGQQ VVRLSWGRSP
301: ASKQDQSAVW SQQADPNQWA SAYYGYGYDA YGYAQDPSYA YNSYAGYTQY PQQVEGATDM ASAAGSHAPG MEKEEVYDPM NLPDVDKLNA SYIAVHGRAM
401: LGRSLWLRTS SLPQSA
101: RRPDAGPDHS IFVGDLAPDV TDYLLQETFR VSYPSVKGAK VVTDPNTGRS KGYGFVKFAD ENEKNRAMTE MNGMYCSTRP MRISAAIPKK TTGSQLQYGA
201: AKAMYPAAGY AVPQVQPVLP DSDPTNTTIF IGNLDQNVTE DELRQICVQF GELIYVKIPA NKACGFVQYA SRASAEEAVQ RLHGTTIGQQ VVRLSWGRSP
301: ASKQDQSAVW SQQADPNQWA SAYYGYGYDA YGYAQDPSYA YNSYAGYTQY PQQVEGATDM ASAAGSHAPG MEKEEVYDPM NLPDVDKLNA SYIAVHGRAM
401: LGRSLWLRTS SLPQSA
001: MAMMHPPQPP QGSYHHPQTL EEVRTLWIGD LQYWVDENYL TSCFSQTGEL VSVKVIRNKI TGQPEGYGFI EFISHAAAER TLQTYNGTQM PGTELTFRLN
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKVT VPSAVAAPVQ AYVAPPESDV TCTTISVANL DQNVTEEELK KAFSQLGEVI YVKIPATKGY GYVQFKTRPS AEEAVQRMQG QVIGQQAVRI
301: SWSKNPGQDG WVTQADPNQW NGYYGYGQGY DAYAYGATQD PSVYAYGGYG YPQYPQQGEG TQDISNSAAG GVAGAEQELY DPLATPDVDK LNAAYLSVHA
401: SAILGRPMWQ RTSSLTSQLG K
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKVT VPSAVAAPVQ AYVAPPESDV TCTTISVANL DQNVTEEELK KAFSQLGEVI YVKIPATKGY GYVQFKTRPS AEEAVQRMQG QVIGQQAVRI
301: SWSKNPGQDG WVTQADPNQW NGYYGYGQGY DAYAYGATQD PSVYAYGGYG YPQYPQQGEG TQDISNSAAG GVAGAEQELY DPLATPDVDK LNAAYLSVHA
401: SAILGRPMWQ RTSSLTSQLG K
Arabidopsis Description
RBP47B'Polyadenylate-binding protein RBP47B' [Source:UniProtKB/Swiss-Prot;Acc:Q8VXZ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.