Factsheet for VIT_06s0004g02040.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23136	Soybean	cytosol	74.38	79.0
Solyc11g065880.1.1	Tomato	nucleus	73.26	78.18
PGSC0003DMT400018998	Potato	nucleus	73.03	77.75
KRH29709	Soybean	cytosol	67.64	75.06
KRH10201	Soybean	mitochondrion, nucleus, plastid	48.99	74.15
GSMUA_Achr8P31320_001	Banana	nucleus	66.52	74.0
KRH24702	Soybean	nucleus	66.52	73.82
HORVU4Hr1G075700.5	Barley	nucleus	68.99	73.8
EER95414	Sorghum	nucleus	68.76	73.73
TraesCS4A01G014200.1	Wheat	nucleus	68.54	73.32
Os03t0174100-02	Rice	nucleus	67.87	72.6
CDY13992	Canola	nucleus	64.72	68.74
AT5G19350.1	Thale cress	cytosol	65.62	68.71
CDX92537	Canola	nucleus	63.82	67.78
Bra002230.1-P	Field mustard	nucleus	63.82	67.78
TraesCS4B01G289600.1	Wheat	nucleus	68.54	66.45
TraesCS4D01G288600.1	Wheat	nucleus	68.09	66.3
CDX88893	Canola	cytosol, nucleus, peroxisome	64.04	66.28
CDX70874	Canola	cytosol, nucleus, peroxisome	63.82	66.05
Bra006502.1-P	Field mustard	nucleus	63.82	66.05
VIT_03s0063g00850.t01	Wine grape	nucleus	48.54	52.17
VIT_18s0001g11080.t01	Wine grape	nucleus	48.31	51.44
VIT_19s0090g00280.t01	Wine grape	nucleus	48.54	46.65
Zm00001d027869_P002	Maize	nucleus	55.06	32.11
VIT_04s0008g02930.t01	Wine grape	nucleus	23.6	26.45
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	24.49	25.83
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	23.82	25.24
VIT_18s0001g10170.t01	Wine grape	cytosol	24.72	17.19
VIT_04s0023g01470.t01	Wine grape	nucleus	14.38	17.16
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	5.62	17.12
VIT_07s0031g00210.t01	Wine grape	cytosol	24.27	16.51
VIT_18s0001g02490.t01	Wine grape	plastid	24.27	16.39
VIT_09s0002g03160.t01	Wine grape	cytosol, nucleus, plastid, vacuole	16.85	15.76
VIT_08s0007g04380.t01	Wine grape	cytosol	21.57	15.14
VIT_18s0001g10210.t01	Wine grape	cytosol	2.02	14.29
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	3.82	13.6
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	23.82	13.47
VIT_18s0001g10220.t01	Wine grape	cytosol	2.92	13.0

Protein Annotations

EntrezGene:100243203	wikigene:100243203	MapMan:16.9.4	Gene3D:3.30.70.330	ProteinID:CBI16387	ProteinID:CBI16387.3
UniProt:D7SL59	EMBL:FN594951	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100243203	wikigene:LOC100243203	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0001BE1149	ArrayExpress:VIT_06s0004g02040	EnsemblPlantsGene:VIT_06s0004g02040	EnsemblPlants:VIT_06s0004g02040.t01
unigene:Vvi.12530	RefSeq:XP_002285479	RefSeq:XP_002285479.1	RefSeq:XP_003632115	RefSeq:XP_003632115.1	SEG:seg

Description

No Description!

Coordinates

chr6:+:2481009..2492193

Molecular Weight (calculated)

49106.5 Da

IEP (calculated)

5.644

GRAVY (calculated)

-0.402

Length

445 amino acids

Sequence
(BLAST)

001: MEAQAHQQQQ WMHPSHASAA TVSSMASAQP YTQPTSVEEV RTLWIGDLQY WVDENYLHSC FAHTGEVISI KIIRNKITGQ PEGYGFVEFV SHAAAERILQ
101: AYNGTQMPGT EQTFRLNWAS FGIGERRPDA GPEHSIFVGD LAPDVTDYLL QETFRAQYPS VRGAKVVTDP NTGRTKGYGF VKFSDEMERN RAMTEMNGVY
201: CSTRPMRISA ATPKKTTGFQ QQYAAAAKAL YPAPAYTTPP LQALPADNDI NNTTIFVGNL DPNVTEEELK QIFSQFGELV YVKIPAGRGC GFVQFGTRTS
301: AEEAIQRMQG TVIGQLVVRI SWGRSPTAKQ DLPGSWGQQA DPSQWSSAYY GYGQGYDAYP YGATQDPSLY AYGAYAGYLQ YPQQARYYLA AMAGAVPAVE
401: QRDELYDPLA TPDVDKLNAA YLAVHGSAIL GRSLWLKTSP FSQMA

Best Arabidopsis Sequence Match ( AT5G19350.1 )
(BLAST)

001: MAMMHPPQPP QGSYHHPQTL EEVRTLWIGD LQYWVDENYL TSCFSQTGEL VSVKVIRNKI TGQPEGYGFI EFISHAAAER TLQTYNGTQM PGTELTFRLN
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKAV YPVTVPSAVA APVQAYVAPP ESDVTCTTIS VANLDQNVTE EELKKAFSQL GEVIYVKIPA TKGYGYVQFK TRPSAEEAVQ RMQGQVIGQQ
301: AVRISWSKNP GQDGWVTQAD PNQWNGYYGY GQGYDAYAYG ATQDPSVYAY GGYGYPQYPQ QGEGTQDISN SAAGGVAGAE QELYDPLATP DVDKLNAAYL
401: SVHASAILGR PMWQRTSSLT SQLGK

Arabidopsis Description

RBP47B'Polyadenylate-binding protein RBP47B' [Source:UniProtKB/Swiss-Prot;Acc:Q8VXZ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.