Factsheet for VIT_18s0001g10210.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g10220.t01	Wine grape	cytosol	92.06	58.0
CDY08990	Canola	cytosol	63.49	40.4
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	58.73	29.6
VIT_18s0001g10170.t01	Wine grape	cytosol	95.24	9.38
VIT_07s0031g00210.t01	Wine grape	cytosol	79.37	7.65
VIT_18s0001g02490.t01	Wine grape	plastid	61.9	5.92
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	69.84	5.59
VIT_08s0007g04380.t01	Wine grape	cytosol	38.1	3.79
VIT_06s0004g02040.t01	Wine grape	nucleus	14.29	2.02
VIT_04s0023g01470.t01	Wine grape	nucleus	6.35	1.07
VIT_18s0001g11080.t01	Wine grape	nucleus	1.59	0.24
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	1.59	0.24
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	1.59	0.24
VIT_19s0090g00280.t01	Wine grape	nucleus	1.59	0.22
VIT_09s0002g03160.t01	Wine grape	cytosol, nucleus, plastid, vacuole	1.59	0.21
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	0.0	0.0
VIT_04s0008g02930.t01	Wine grape	nucleus	0.0	0.0
VIT_03s0063g00850.t01	Wine grape	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.1900.10	MapMan:35.1	ProteinID:CCB45822	ProteinID:CCB45822.1	UniProt:F6H1B3	EMBL:FN595227
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0016740
GO:GO:0016747	InterPro:IPR002004	InterPro:PABP-dom	InterPro:PABP_HYD	PFAM:PF00658	PFscan:PS51309
PANTHER:PTHR24012	PANTHER:PTHR24012:SF349	SMART:SM00517	SUPFAM:SSF63570	UniParc:UPI000210A939	ArrayExpress:VIT_18s0001g10210
EnsemblPlantsGene:VIT_18s0001g10210	EnsemblPlants:VIT_18s0001g10210.t01	:	:	:	:

Description

No Description!

Coordinates

chr18:+:8544586..8549116

Molecular Weight (calculated)

6902.3 Da

IEP (calculated)

3.992

GRAVY (calculated)

-0.032

Length

63 amino acids

Sequence
(BLAST)

1: MFSMTGMLLE MDQTEVLHLL ESPEALKSKV AEAMDVLRNV AQQQANSPTE QLASLSLNDS LVP

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.