Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- nucleus 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g065880.1.1 | Tomato | nucleus | 97.85 | 98.08 |
| VIT_06s0004g02040.t01 | Wine grape | nucleus | 77.75 | 73.03 |
| KRH23136 | Soybean | cytosol | 71.53 | 71.36 |
| KRH29709 | Soybean | cytosol | 67.22 | 70.07 |
| Os03t0174100-02 | Rice | nucleus | 69.38 | 69.71 |
| HORVU4Hr1G075700.5 | Barley | nucleus | 69.38 | 69.71 |
| GSMUA_Achr8P31320_001 | Banana | nucleus | 66.03 | 69.0 |
| TraesCS4A01G014200.1 | Wheat | nucleus | 68.66 | 68.99 |
| KRH24702 | Soybean | nucleus | 66.03 | 68.83 |
| EER95414 | Sorghum | nucleus | 67.94 | 68.43 |
| KRH10201 | Soybean | mitochondrion, nucleus, plastid | 47.61 | 67.69 |
| AT5G19350.1 | Thale cress | cytosol | 68.42 | 67.29 |
| CDY13992 | Canola | nucleus | 64.35 | 64.2 |
| Bra002230.1-P | Field mustard | nucleus | 64.11 | 63.96 |
| CDX92537 | Canola | nucleus | 63.4 | 63.25 |
| TraesCS4D01G288600.1 | Wheat | nucleus | 68.66 | 62.8 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 64.59 | 62.79 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 64.35 | 62.56 |
| TraesCS4B01G289600.1 | Wheat | nucleus | 68.66 | 62.53 |
| Bra006502.1-P | Field mustard | nucleus | 64.11 | 62.33 |
| PGSC0003DMT400013036 | Potato | nucleus | 47.85 | 50.0 |
| PGSC0003DMT400020621 | Potato | nucleus | 47.37 | 50.0 |
| PGSC0003DMT400057203 | Potato | cytosol | 47.61 | 49.38 |
| PGSC0003DMT400029379 | Potato | nucleus | 47.13 | 49.25 |
| PGSC0003DMT400042504 | Potato | nucleus | 47.13 | 47.7 |
| PGSC0003DMT400066648 | Potato | nucleus | 47.37 | 47.14 |
| Zm00001d027869_P002 | Maize | nucleus | 55.02 | 30.14 |
| PGSC0003DMT400007513 | Potato | mitochondrion, nucleus | 23.45 | 24.44 |
| PGSC0003DMT400012431 | Potato | mitochondrion, nucleus | 24.16 | 24.22 |
| PGSC0003DMT400066072 | Potato | nucleus | 23.21 | 23.66 |
| PGSC0003DMT400058919 | Potato | nucleus | 23.45 | 23.5 |
| PGSC0003DMT400012508 | Potato | nucleus | 6.22 | 20.97 |
| PGSC0003DMT400014744 | Potato | nucleus | 15.79 | 18.13 |
| PGSC0003DMT400023075 | Potato | nucleus | 15.55 | 17.91 |
| PGSC0003DMT400066245 | Potato | extracellular | 26.08 | 16.95 |
| PGSC0003DMT400039842 | Potato | cytosol | 23.92 | 16.67 |
| PGSC0003DMT400033802 | Potato | cytosol | 23.21 | 15.95 |
| PGSC0003DMT400021673 | Potato | cytosol | 23.45 | 15.61 |
| PGSC0003DMT400064531 | Potato | cytosol | 18.9 | 14.85 |
Protein Annotations
| EntrezGene:102597277 | MapMan:16.9.4 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M1ABH1 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | EnsemblPlantsGene:PGSC0003DMG400007361 | PGSC:PGSC0003DMG400007361 | EnsemblPlants:PGSC0003DMT400018998 | PFscan:PS50102 | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF8 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002953A8A |
| RefSeq:XP_006361746.1 | SEG:seg | : | : | : | : |
Description
Nuclear acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007361]
Coordinates
chr11:-:38170861..38179832
Molecular Weight (calculated)
46512.3 Da
IEP (calculated)
5.249
GRAVY (calculated)
-0.465
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTQQPYHQP ATLEEVRTLW IGDLPYWADE SYLHSWFAHT AEVLSIKVIR NKITGQPEGY GFVEFGAHPV AERILQSYNG TQIPGTELTF RLNWASFGIG
101: ERRDAGPEHS IFVGDLAPDV TDYLLQETFR THYPSVRGAK VVTDPNTGRS KGYGFVKFAD ETERNRAMTE MNGMYCSTRP MRISAATPKK SNTIQQQYAV
201: AKAVYPPAVY TPTVQTIPVD NDLTNTTVYV GNLDPNLTEE ELRQVFLQFG EIVYVKIPAS KGCGFVQFSA RPSAEEAIQR MQGAVVGQQI VRVSWGRSPT
301: AKQDAGLWGQ PADPTQWNAY YGYGQGYDAY AYGATQDPSL YAYGAYAGYT QYPQQAEGAQ DLASMTGAPP VIEQQREEQH DPLAVPDVDR LNNAYLAVHA
401: STILGRPLWQ RTSSFSQV
101: ERRDAGPEHS IFVGDLAPDV TDYLLQETFR THYPSVRGAK VVTDPNTGRS KGYGFVKFAD ETERNRAMTE MNGMYCSTRP MRISAATPKK SNTIQQQYAV
201: AKAVYPPAVY TPTVQTIPVD NDLTNTTVYV GNLDPNLTEE ELRQVFLQFG EIVYVKIPAS KGCGFVQFSA RPSAEEAIQR MQGAVVGQQI VRVSWGRSPT
301: AKQDAGLWGQ PADPTQWNAY YGYGQGYDAY AYGATQDPSL YAYGAYAGYT QYPQQAEGAQ DLASMTGAPP VIEQQREEQH DPLAVPDVDR LNNAYLAVHA
401: STILGRPLWQ RTSSFSQV
001: MAMMHPPQPP QGSYHHPQTL EEVRTLWIGD LQYWVDENYL TSCFSQTGEL VSVKVIRNKI TGQPEGYGFI EFISHAAAER TLQTYNGTQM PGTELTFRLN
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKAV YPVTVPSAVA APVQAYVAPP ESDVTCTTIS VANLDQNVTE EELKKAFSQL GEVIYVKIPA TKGYGYVQFK TRPSAEEAVQ RMQGQVIGQQ
301: AVRISWSKNP GQDGWVTQAD PNQWNGYYGY GQGYDAYAYG ATQDPSVYAY GGYGYPQYPQ QGEGTQDISN SAAGGVAGAE QELYDPLATP DVDKLNAAYL
401: SVHASAILGR PMWQRTSSLT SQLGK
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKAV YPVTVPSAVA APVQAYVAPP ESDVTCTTIS VANLDQNVTE EELKKAFSQL GEVIYVKIPA TKGYGYVQFK TRPSAEEAVQ RMQGQVIGQQ
301: AVRISWSKNP GQDGWVTQAD PNQWNGYYGY GQGYDAYAYG ATQDPSVYAY GGYGYPQYPQ QGEGTQDISN SAAGGVAGAE QELYDPLATP DVDKLNAAYL
401: SVHASAILGR PMWQRTSSLT SQLGK
Arabidopsis Description
RBP47B'Polyadenylate-binding protein RBP47B' [Source:UniProtKB/Swiss-Prot;Acc:Q8VXZ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.