Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G014200.1 | Wheat | nucleus | 89.93 | 98.8 |
| HORVU4Hr1G075700.5 | Barley | nucleus | 89.28 | 98.08 |
| TraesCS4B01G289600.1 | Wheat | nucleus | 96.06 | 95.64 |
| Os03t0174100-02 | Rice | nucleus | 78.99 | 86.78 |
| EER95414 | Sorghum | nucleus | 76.37 | 84.1 |
| GSMUA_Achr8P31320_001 | Banana | nucleus | 60.83 | 69.5 |
| PGSC0003DMT400018998 | Potato | nucleus | 62.8 | 68.66 |
| Solyc11g065880.1.1 | Tomato | nucleus | 62.58 | 68.59 |
| VIT_06s0004g02040.t01 | Wine grape | nucleus | 66.3 | 68.09 |
| KRH23136 | Soybean | cytosol | 61.05 | 66.59 |
| KRH29709 | Soybean | cytosol | 57.55 | 65.59 |
| KRH24702 | Soybean | nucleus | 56.89 | 64.84 |
| AT5G19350.1 | Thale cress | cytosol | 59.74 | 64.24 |
| CDX92537 | Canola | nucleus | 57.77 | 63.01 |
| Bra002230.1-P | Field mustard | nucleus | 57.77 | 63.01 |
| CDY13992 | Canola | nucleus | 57.55 | 62.77 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 57.77 | 61.4 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 57.55 | 61.16 |
| Bra006502.1-P | Field mustard | nucleus | 57.55 | 61.16 |
| KRH10201 | Soybean | mitochondrion, nucleus, plastid | 39.17 | 60.88 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 42.67 | 57.02 |
| TraesCS6D01G081700.2 | Wheat | plastid | 47.05 | 52.44 |
| TraesCS2D01G472700.1 | Wheat | nucleus | 46.83 | 49.08 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 41.36 | 45.32 |
| TraesCS2D01G227900.5 | Wheat | nucleus | 44.64 | 43.97 |
| TraesCS2D01G315400.2 | Wheat | plastid | 40.04 | 43.16 |
| TraesCS2D01G266400.1 | Wheat | nucleus | 28.88 | 37.08 |
| Zm00001d027869_P002 | Maize | nucleus | 59.08 | 35.39 |
| TraesCS2D01G176700.1 | Wheat | nucleus | 21.66 | 23.24 |
| TraesCS7D01G250300.1 | Wheat | mitochondrion, nucleus | 20.57 | 21.03 |
| TraesCS4D01G150600.2 | Wheat | nucleus | 20.57 | 20.94 |
| TraesCS1D01G142300.1 | Wheat | nucleus | 14.22 | 17.66 |
| TraesCS3D01G076800.1 | Wheat | mitochondrion | 9.19 | 16.87 |
| TraesCS3D01G076700.1 | Wheat | mitochondrion | 14.88 | 15.28 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 22.1 | 15.21 |
| TraesCS7D01G287900.1 | Wheat | cytosol | 20.79 | 14.89 |
| TraesCS5D01G167000.1 | Wheat | nucleus, unclear | 20.79 | 14.59 |
| TraesCS4D01G205700.1 | Wheat | cytosol | 19.47 | 13.63 |
| TraesCS2D01G593700.1 | Wheat | nucleus | 19.26 | 9.07 |
| TraesCS2D01G594800.1 | Wheat | nucleus | 18.16 | 8.68 |
| TraesCS2D01G593900.1 | Wheat | nucleus | 17.94 | 8.0 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR43955 | PANTHER:PTHR43955:SF8 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| EnsemblPlantsGene:TraesCS4D01G288600 | EnsemblPlants:TraesCS4D01G288600.1 | TIGR:cd12344 | TIGR:cd12345 | TIGR:cd12346 | SEG:seg |
Description
No Description!
Coordinates
chr4D:+:459554331..459558931
Molecular Weight (calculated)
49985.6 Da
IEP (calculated)
5.967
GRAVY (calculated)
-0.498
Length
457 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTTETGQDP VPPPPHRRPL AAAPPTQAKP HRPPSQGAAA LMMMAGPYHQ PTTLEEVRTL WIGDLQYWAD ENYLYGCFAH TGEVQSVKLI RNKLSGLPEG
101: YGFIEFISHE AAEKVLQAYN GAQMPGTEHT FRLNWASFSS GEKRPDAGPD HSIFVGDLAP DVTDYLLQET FRVNYSSVRG AKVVTDPNTG RSKGYGFVKF
201: ADENEKTRAM SEMNGVYCST RPMRISAAIP KKSSGSQLQY GAAKAMYPAA AYAIPQAQTV LPDSDPTNTT IFIGNLDPNV TEEELRQICV QFGELIYVKI
301: PVGKGCGFVQ YASRASAEEA VQRLHGTVIG QQVVRLSWGR SPANKQDQSA AWGQQTDPNQ WSAYYSYGYD PYGYPQDPSY AYGAYAGYAQ YPQQVEGATD
401: MASAAGGHAP GMEQNEVYDP MSLPDVEKMN ASYMAVHGTT MLGRHLWLKT SPLSQSA
101: YGFIEFISHE AAEKVLQAYN GAQMPGTEHT FRLNWASFSS GEKRPDAGPD HSIFVGDLAP DVTDYLLQET FRVNYSSVRG AKVVTDPNTG RSKGYGFVKF
201: ADENEKTRAM SEMNGVYCST RPMRISAAIP KKSSGSQLQY GAAKAMYPAA AYAIPQAQTV LPDSDPTNTT IFIGNLDPNV TEEELRQICV QFGELIYVKI
301: PVGKGCGFVQ YASRASAEEA VQRLHGTVIG QQVVRLSWGR SPANKQDQSA AWGQQTDPNQ WSAYYSYGYD PYGYPQDPSY AYGAYAGYAQ YPQQVEGATD
401: MASAAGGHAP GMEQNEVYDP MSLPDVEKMN ASYMAVHGTT MLGRHLWLKT SPLSQSA
001: MAMMHPPQPP QGSYHHPQTL EEVRTLWIGD LQYWVDENYL TSCFSQTGEL VSVKVIRNKI TGQPEGYGFI EFISHAAAER TLQTYNGTQM PGTELTFRLN
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKVT VPSAVAAPVQ AYVAPPESDV TCTTISVANL DQNVTEEELK KAFSQLGEVI YVKIPATKGY GYVQFKTRPS AEEAVQRMQG QVIGQQAVRI
301: SWSKNPGQDG WVTQADPNQW NGYYGYGQGY DAYAYGATQD PSVYAYGGYG YPQYPQQGEG TQDISNSAAG GVAGAEQELY DPLATPDVDK LNAAYLSVHA
401: SAILGRPMWQ RTSSLTSQLG K
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKVT VPSAVAAPVQ AYVAPPESDV TCTTISVANL DQNVTEEELK KAFSQLGEVI YVKIPATKGY GYVQFKTRPS AEEAVQRMQG QVIGQQAVRI
301: SWSKNPGQDG WVTQADPNQW NGYYGYGQGY DAYAYGATQD PSVYAYGGYG YPQYPQQGEG TQDISNSAAG GVAGAEQELY DPLATPDVDK LNAAYLSVHA
401: SAILGRPMWQ RTSSLTSQLG K
Arabidopsis Description
RBP47B'Polyadenylate-binding protein RBP47B' [Source:UniProtKB/Swiss-Prot;Acc:Q8VXZ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.