Factsheet for TraesCS2D01G176700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G459300.1
TraesCS2A01G459400.1
TraesCS2A01G459500.1
TraesCS2B01G480800.1
TraesCS2B01G480900.1
TraesCS2B01G481200.1
TraesCS2B01G481300.1
TraesCS2D01G459600.1
TraesCS2D01G459700.1
TraesCS2D01G459800.1
TraesCS4A01G296700.1
TraesCS4B01G017000.1
TraesCS4D01G015300.1
TraesCS6A01G306500.1
TraesCS6B01G334900.1
TraesCS6D01G285600.1
TraesCS7B01G091900.1
TraesCS7D01G187600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14100.1	TraesCS2A01G459300.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2A01G459400.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2A01G459500.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2B01G480800.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2B01G480900.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2B01G481200.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2B01G481300.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2D01G459600.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2D01G459700.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2D01G459800.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS4A01G296700.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS4B01G017000.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS4D01G015300.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS6A01G306500.1	AT3G47620.1	21798944
AT3G14100.1	TraesCS6B01G334900.1	AT3G47620.1	21798944
AT3G14100.1	TraesCS6D01G285600.1	AT3G47620.1	21798944
AT3G14100.1	TraesCS7B01G091900.1	AT3G47620.1	21798944
AT3G14100.1	TraesCS7D01G187600.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G195400.1	Wheat	nucleus	99.06	98.37
TraesCS2A01G169100.1	Wheat	nucleus	98.36	97.9
HORVU2Hr1G031260.2	Barley	nucleus, plastid	97.89	83.9
Os07t0615400-01	Rice	nucleus	83.8	83.61
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	68.31	69.78
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	69.01	69.67
Solyc06g063000.2.1	Tomato	nucleus	68.08	69.54
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	68.31	69.29
GSMUA_Achr6P11660_001	Banana	mitochondrion	68.78	69.27
GSMUA_Achr10P...	Banana	mitochondrion	69.01	69.18
KRH47641	Soybean	nucleus	67.61	68.25
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	69.48	68.2
KRH06218	Soybean	nucleus	66.2	67.79
PGSC0003DMT400058919	Potato	nucleus	64.55	65.95
Solyc03g122180.2.1	Tomato	nucleus	64.55	65.95
AT1G17370.1	Thale cress	mitochondrion, nucleus	64.79	65.87
CDY63384	Canola	mitochondrion, nucleus	64.32	65.55
AT3G14100.1	Thale cress	nucleus	65.49	65.34
Bra030985.1-P	Field mustard	mitochondrion, nucleus	64.08	65.31
TraesCS4D01G150600.2	Wheat	nucleus	68.78	65.26
KRH02581	Soybean	mitochondrion	63.15	65.13
GSMUA_Achr11P...	Banana	nucleus	67.84	65.09
Bra030908.1-P	Field mustard	nucleus	63.85	64.92
KRH19347	Soybean	mitochondrion, nucleus	62.44	64.88
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	61.03	64.84
CDY02486	Canola	nucleus	63.85	64.76
CDY51403	Canola	nucleus	63.62	64.52
CDY61476	Canola	nucleus	63.38	64.44
Bra037962.1-P	Field mustard	nucleus	63.38	64.13
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	60.33	64.09
Solyc07g042180.2.1	Tomato	nucleus	59.86	64.07
PGSC0003DMT400066072	Potato	nucleus	61.5	63.9
CDY33092	Canola	nucleus	63.38	63.53
AT1G54080.2	Thale cress	nucleus	61.97	61.4
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	69.25	59.48
TraesCS7D01G250300.1	Wheat	mitochondrion, nucleus	58.45	55.7
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	18.78	54.79
CDX81822	Canola	mitochondrion, nucleus	64.32	50.28
TraesCS5D01G250100.1	Wheat	nucleus	22.77	28.36
TraesCS6D01G184600.1	Wheat	cytosol, nucleus, plastid	23.94	24.46
TraesCS2D01G472700.1	Wheat	nucleus	24.88	24.31
TraesCS2D01G315400.2	Wheat	plastid	24.18	24.29
TraesCS6D01G081700.2	Wheat	plastid	21.83	22.68
TraesCS2D01G227900.5	Wheat	nucleus	23.94	21.98
TraesCS4D01G288600.1	Wheat	nucleus	23.24	21.66
TraesCS1D01G142300.1	Wheat	nucleus	18.31	21.2
TraesCS2D01G266400.1	Wheat	nucleus	16.43	19.66
TraesCS3D01G076800.1	Wheat	mitochondrion	9.86	16.87
TraesCS3D01G076700.1	Wheat	mitochondrion	15.96	15.28
TraesCS2D01G358000.1	Wheat	cytosol	22.77	14.61
TraesCS7D01G287900.1	Wheat	cytosol	21.83	14.58
TraesCS5D01G167000.1	Wheat	nucleus, unclear	21.6	14.13
TraesCS4D01G205700.1	Wheat	cytosol	20.42	13.32
TraesCS2D01G593700.1	Wheat	nucleus	27.93	12.27
TraesCS2D01G594800.1	Wheat	nucleus	25.35	11.3
TraesCS2D01G593900.1	Wheat	nucleus	25.59	10.63

Protein Annotations

MapMan:16.9.3	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44160	PANTHER:PTHR44160:SF4
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928
EnsemblPlantsGene:TraesCS2D01G176700	EnsemblPlants:TraesCS2D01G176700.1	TIGR:cd12352	TIGR:cd12354	TIGR:cd12619	SEG:seg

Description

No Description!

Coordinates

chr2D:-:120103175..120107522

Molecular Weight (calculated)

46443.7 Da

IEP (calculated)

7.970

GRAVY (calculated)

-0.433

Length

426 amino acids

Sequence
(BLAST)

001: MLPQQSQAAA MMQQAAAMQS MYAMPPPPHH HHLLGAAPPQ QIEPILTGNL PPGFDTSTCR SVYVGNIHVQ VTEALLREVF QSAGSVDGCK LIRKEKSSYG
101: FVDYYERGSA ALAILTLNRK QIFGQPIRVN WAYASGQRED TTDHFHIFVG DLSPEVTDSA LFAFFSAYSP NCSDARVMWD QKTGRSRGYG FVSFRNQQDA
201: QSAINDLNGQ WLGNRQIRCN WATKGANSGE DQLTSDSKSI ADVNNNFTEN AKQKSNEDAP ENNPLYRTVY VGNLAHEVTQ DVLHRFFHAL GAGAIEEVRV
301: QHGKGFGFVK YSNHAETALA IQTGNGRILG GKPVKCSWGN KPTPPGTTSA PLPPPAAPGH PAAADLMAYQ RAIAMSKMAS TQALMQAQHL RQAAMGMGVG
401: ASQAMYDGTF QNVGASQQQQ QQLMYY

Best Arabidopsis Sequence Match ( AT3G14100.1 )
(BLAST)

001: MQNPRLKQHQ QQQQQQAMMQ QQALMQQHSL YHPGVLAPPQ LEPVPSGNLP PGFDPSTCRS VYVGNIHTQV TEPLLQEIFT STGPVESSKL IRKDKSSYGF
101: VHYFDRRSAA LAILSLNGRH LFGQPIKVNW AYATGQREDT SSHFNIFVGD LSPEVTDATL YQSFSVFSSC SDARVMWDQK TGRSRGFGFV SFRNQQDAQT
201: AINEMNGKWL SSRQIRCNWA TKGATSGDDK LSSDGKSVVE LTTGSSEDGK ETLNEETPEN NSQFTTVYVG NLAPEVTQLD LHRYFHALGA GVIEEVRVQR
301: DKGFGFVRYN THPEAALAIQ MGNTQPYLFN RQIKCSWGNK PTPPGTASNP LPPPAPAPVP GLSAADLLNY ERQLALSKMA SVNALMHQQG QHPLRQAHGI
401: NAAGATAAMY DGGFQNVAAA QQLMYYQ

Arabidopsis Description

UBP1COligouridylate-binding protein 1C [Source:UniProtKB/Swiss-Prot;Acc:Q9LJH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.