Factsheet for GSMUA_Achr3P02150_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 4
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P25720_001
GSMUA_Achr4P00500_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P03500_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001
GSMUA_Achr9P30650_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14100.1	GSMUA_Achr11P...	AT1G16500.1	21798944
AT3G14100.1	GSMUA_Achr1P25720_001	AT1G16500.1	21798944
AT3G14100.1	GSMUA_Achr7P03500_001	AT1G16500.1	21798944
AT3G14100.1	GSMUA_Achr9P30650_001	AT1G16500.1	21798944
AT3G14100.1	GSMUA_AchrUn_...	AT1G16500.1	21798944
AT3G14100.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT3G14100.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT3G14100.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT3G14100.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P11660_001	Banana	mitochondrion	85.71	87.94
GSMUA_Achr10P...	Banana	mitochondrion	84.1	85.88
GSMUA_Achr11P...	Banana	nucleus	84.33	82.43
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	78.8	81.43
KRH47641	Soybean	nucleus	78.8	81.04
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	78.34	80.57
KRH06218	Soybean	nucleus	77.19	80.53
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	76.04	79.14
Solyc06g063000.2.1	Tomato	nucleus	75.58	78.66
PGSC0003DMT400058919	Potato	nucleus	74.19	77.22
Solyc03g122180.2.1	Tomato	nucleus	73.96	76.98
AT1G17370.1	Thale cress	mitochondrion, nucleus	73.27	75.89
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	86.41	75.6
CDY63384	Canola	mitochondrion, nucleus	72.81	75.6
Bra030985.1-P	Field mustard	mitochondrion, nucleus	72.81	75.6
KRH19347	Soybean	mitochondrion, nucleus	70.74	74.88
KRH02581	Soybean	mitochondrion	71.2	74.82
PGSC0003DMT400066072	Potato	nucleus	69.82	73.9
AT3G14100.1	Thale cress	nucleus	71.89	73.07
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	67.51	73.07
Solyc07g042180.2.1	Tomato	nucleus	66.82	72.86
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	67.28	72.82
Os07t0615400-01	Rice	nucleus	71.2	72.37
Os11t0620100-01	Rice	nucleus	73.5	72.34
Bra030908.1-P	Field mustard	nucleus	69.82	72.31
CDY02486	Canola	nucleus	69.82	72.14
CDY61476	Canola	nucleus	69.35	71.84
Zm00001d026528_P001	Maize	plastid	36.41	71.82
Bra037962.1-P	Field mustard	nucleus	69.59	71.73
CDY51403	Canola	nucleus	69.35	71.67
TraesCS4B01G148600.1	Wheat	nucleus	73.27	71.46
CDY33092	Canola	nucleus	69.59	71.06
Zm00001d048824_P004	Maize	nucleus	73.04	70.92
TraesCS4D01G150600.2	Wheat	nucleus	72.58	70.16
EES08860	Sorghum	nucleus	71.2	70.07
TraesCS4A01G150000.1	Wheat	mitochondrion	72.12	69.87
TraesCS2D01G176700.1	Wheat	nucleus	68.2	69.48
TraesCS2A01G169100.1	Wheat	nucleus	67.97	68.93
AT1G54080.2	Thale cress	nucleus	68.2	68.84
TraesCS2B01G195400.1	Wheat	nucleus	67.97	68.76
GSMUA_Achr9P14120_001	Banana	nucleus	64.29	68.72
HORVU4Hr1G033990.7	Barley	golgi, nucleus	68.43	67.65
HORVU2Hr1G031260.2	Barley	nucleus, plastid	68.66	59.96
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	20.05	59.59
CDX81822	Canola	mitochondrion, nucleus	73.5	58.53
Zm00001d026522_P001	Maize	nucleus	31.11	55.33
GSMUA_Achr9P15210_001	Banana	nucleus	23.04	32.05
GSMUA_Achr3P06840_001	Banana	nucleus	22.81	31.73
GSMUA_Achr6P10190_001	Banana	nucleus	21.89	30.35
GSMUA_Achr9P24980_001	Banana	cytosol	22.12	29.0
GSMUA_Achr10P...	Banana	nucleus	20.97	28.98
GSMUA_Achr6P29410_001	Banana	nucleus	21.66	28.66
GSMUA_Achr8P31320_001	Banana	nucleus	25.35	27.5
GSMUA_Achr10P...	Banana	nucleus	25.12	25.12
GSMUA_Achr3P01720_001	Banana	mitochondrion	23.04	24.81
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	22.35	23.83
GSMUA_Achr6P09470_001	Banana	nucleus	7.37	21.77
GSMUA_Achr5P20140_001	Banana	nucleus	16.59	19.67
GSMUA_Achr4P00840_001	Banana	cytosol	19.35	17.36
GSMUA_Achr4P20270_001	Banana	cytosol	22.35	15.09
GSMUA_Achr9P00990_001	Banana	cytosol	22.12	14.75
GSMUA_AchrUn_...	Banana	cytosol	22.12	14.72
GSMUA_Achr4P09890_001	Banana	cytosol	21.89	14.57
GSMUA_Achr5P24940_001	Banana	plastid	19.35	12.61
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	18.66	12.5
GSMUA_Achr9P10860_001	Banana	cytosol	20.28	12.31
GSMUA_Achr7P05430_001	Banana	nucleus	21.43	10.29

Protein Annotations

MapMan:16.9.3	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	EnsemblPlantsGene:GSMUA_Achr3G02150_001	EnsemblPlants:GSMUA_Achr3P02150_001	EnsemblPlants:GSMUA_Achr3T02150_001	InterPro:IPR000504	InterPro:IPR012677
UniProt:M0SB33	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44160	PANTHER:PTHR44160:SF2
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002959088	SEG:seg

Description

Putative Nucleolysin TIAR [Source:GMGC_GENE;Acc:GSMUA_Achr3G02150_001]

Coordinates

chr3:+:1422709..1432041

Molecular Weight (calculated)

47245.7 Da

IEP (calculated)

6.667

GRAVY (calculated)

-0.311

Length

434 amino acids

Sequence
(BLAST)

001: MQQQRLKQQQ QALMQQALLL QQQQSLYPHP GLLAAPQIEP ILSGNLPPGF DPSTCRSVYV GNVHLQVTEA LLQEVFQSTG LVEGCKLIRK EKSSFGFVDY
101: YDRQSAALAI ITLNGRQLFG QPLKVNWAYA SGQREDTSGH YNIFVGDLSP EVTDATLFAC FCVYTSCSDA RVMWDQKTGR SRGFGFVSFR NQQDAQSAIN
201: DLNGKWLGSR QIRCNWATKG ANANEDKQIS DSKSVVDPTN GSVEDGQDNT NDDGPENNPQ YTTVYVGNLA HEASIQLSVT QLDLHRHFHT LGAGVIEEVR
301: VQRDKGFGFV RYSNHSEAAL AIQVGNGRML CGKPIKCSWG SKPTPPGTAS TPLPPPAAAF PGLSAADFFG YDRSLALAGA GANQALIHVQ GQHALKQAAM
401: GMGAGASQVI YDGGFQNVSA AQQLIIELWF RLEF

Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)

001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ

Arabidopsis Description

UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.