Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 5
- cytosol 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_18s0001g02490.t01 | Wine grape | plastid | 62.76 | 63.43 |
| KRG91724 | Soybean | cytosol | 61.41 | 62.73 |
| PGSC0003DMT400064531 | Potato | cytosol | 48.5 | 60.71 |
| KRH70233 | Soybean | cytosol | 54.5 | 57.71 |
| KRH08608 | Soybean | endoplasmic reticulum | 57.36 | 57.36 |
| GSMUA_AchrUn_... | Banana | cytosol | 53.45 | 54.6 |
| GSMUA_Achr4P09890_001 | Banana | cytosol | 52.4 | 53.53 |
| GSMUA_Achr9P00990_001 | Banana | cytosol | 51.95 | 53.15 |
| Bra016371.1-P | Field mustard | plastid | 46.25 | 51.76 |
| GSMUA_Achr4P20270_001 | Banana | cytosol | 49.4 | 51.17 |
| CDY41472 | Canola | cytosol, plastid | 48.05 | 49.92 |
| CDX96344 | Canola | plastid | 50.9 | 49.56 |
| Bra016118.1-P | Field mustard | plastid | 50.9 | 49.56 |
| AT1G22760.1 | Thale cress | nucleus, plastid | 49.1 | 49.55 |
| CDX72826 | Canola | plastid | 50.75 | 49.42 |
| Bra003915.1-P | Field mustard | cytosol | 47.45 | 48.77 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 47.45 | 48.77 |
| CDY36684 | Canola | plastid | 48.35 | 48.42 |
| CDY37935 | Canola | nucleus | 47.3 | 48.39 |
| Bra007984.1-P | Field mustard | plastid | 44.89 | 47.92 |
| AT1G71770.1 | Thale cress | cytosol, plastid | 48.95 | 47.8 |
| CDY03685 | Canola | nucleus | 46.1 | 47.74 |
| GSMUA_Achr8P24250_001 | Banana | cytosol, plastid | 44.14 | 45.37 |
| GSMUA_Achr4P00840_001 | Banana | cytosol | 28.83 | 39.67 |
| GSMUA_Achr7P05430_001 | Banana | nucleus | 51.65 | 38.05 |
| GSMUA_Achr9P10860_001 | Banana | cytosol | 37.24 | 34.69 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 12.61 | 26.84 |
| GSMUA_Achr6P29410_001 | Banana | nucleus | 13.21 | 26.83 |
| GSMUA_Achr10P... | Banana | nucleus | 12.46 | 26.43 |
| GSMUA_Achr9P24980_001 | Banana | cytosol | 13.06 | 26.28 |
| GSMUA_Achr5P20140_001 | Banana | nucleus | 14.11 | 25.68 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 11.71 | 25.0 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 11.56 | 24.68 |
| GSMUA_Achr8P03580_001 | Banana | cytosol, mitochondrion, nucleus | 14.56 | 23.83 |
| GSMUA_Achr8P31320_001 | Banana | nucleus | 13.66 | 22.75 |
| GSMUA_Achr10P... | Banana | nucleus | 14.56 | 22.35 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 13.36 | 22.08 |
| GSMUA_Achr6P11660_001 | Banana | mitochondrion | 12.76 | 20.09 |
| GSMUA_Achr9P14120_001 | Banana | nucleus | 12.16 | 19.95 |
| GSMUA_Achr10P... | Banana | mitochondrion | 12.46 | 19.53 |
| GSMUA_Achr3P02150_001 | Banana | mitochondrion, nucleus | 12.61 | 19.35 |
| GSMUA_Achr11P... | Banana | nucleus | 12.61 | 18.92 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 3.9 | 17.69 |
| GSMUA_Achr2P21780_001 | Banana | nucleus, plastid | 12.61 | 16.94 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | EnsemblPlantsGene:GSMUA_Achr5G24940_001 |
| EnsemblPlants:GSMUA_Achr5P24940_001 | EnsemblPlants:GSMUA_Achr5T24940_001 | InterPro:IPR000504 | InterPro:IPR002004 | InterPro:IPR012677 | UniProt:M0T1G9 |
| InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:PABP-dom | InterPro:PABP_1234 | InterPro:PABP_HYD | PFAM:PF00076 | PFAM:PF00658 |
| PFscan:PS50102 | PFscan:PS51309 | PANTHER:PTHR24012 | PANTHER:PTHR24012:SF349 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 | SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 |
| TIGRFAMs:TIGR01628 | UniParc:UPI0002954E4B | SEG:seg | : | : | : |
Description
Polyadenylate-binding protein 5 [Source:GMGC_GENE;Acc:GSMUA_Achr5G24940_001]
Coordinates
chr5:+:26127824..26135153
Molecular Weight (calculated)
73317.4 Da
IEP (calculated)
9.242
GRAVY (calculated)
-0.278
Length
666 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTSAALSQ LSPLQISSTQ SQGGAFGRAS LYVGDLDLAV NEGQLYDLFS QIAPVTSVRV CRDQIRNVSL GYAYVNFHSL QDATRARDVL NFTPLNGKLI
101: RIMFSNRDPS IRKNGVGNVF IKNLDKTIDN KSLHDIFVAF GTVLSCKVAT GITGQSKGYG FVQFENEESA ERAISRLNGM LINDKPVHVG HFVRRQERHQ
201: PDGPPKFTNV YIKNLPEPYT DEDLKSYFGV CGNITSGVVM KDVNGKSRGF GFVNFEMPEA AAAAIEKFNG TALFDKVLYV GKAQKKSERE AELRAKYEQE
301: RNGRLEKLQG LSLYLKNLDD SINDEKLREL FSPFGTVTSC RVMLDTHGQS KGSGFVAFSS LDEANRAING LNGKMVGKKP LYVGIFQRRE ERRAMLQAHF
401: ARLNSPGALA PAMPTMPGYH PVPSRLAPQQ LYFGQGVSSL IPSQPAGYGY QPQLIPGIRP GVVPNYMMPY SPQRQGQLGQ RTGSRRGGGT PQLMQQQQQI
501: IQQNANQGFR YMQNSRNGVD PMMSPQGLMG SMMPMPLDAS GIHITSVDAV HPSPIPIMTL ASALASESPE RQRLMLGEQL YPLVERIEQE QAGKVTGMLL
601: EMDQTEVLHL IESPDALKKK VVEAMEVLHL AHATACLRST DFISQSHVKV FLPVAYAKSV CVCVCV
101: RIMFSNRDPS IRKNGVGNVF IKNLDKTIDN KSLHDIFVAF GTVLSCKVAT GITGQSKGYG FVQFENEESA ERAISRLNGM LINDKPVHVG HFVRRQERHQ
201: PDGPPKFTNV YIKNLPEPYT DEDLKSYFGV CGNITSGVVM KDVNGKSRGF GFVNFEMPEA AAAAIEKFNG TALFDKVLYV GKAQKKSERE AELRAKYEQE
301: RNGRLEKLQG LSLYLKNLDD SINDEKLREL FSPFGTVTSC RVMLDTHGQS KGSGFVAFSS LDEANRAING LNGKMVGKKP LYVGIFQRRE ERRAMLQAHF
401: ARLNSPGALA PAMPTMPGYH PVPSRLAPQQ LYFGQGVSSL IPSQPAGYGY QPQLIPGIRP GVVPNYMMPY SPQRQGQLGQ RTGSRRGGGT PQLMQQQQQI
501: IQQNANQGFR YMQNSRNGVD PMMSPQGLMG SMMPMPLDAS GIHITSVDAV HPSPIPIMTL ASALASESPE RQRLMLGEQL YPLVERIEQE QAGKVTGMLL
601: EMDQTEVLHL IESPDALKKK VVEAMEVLHL AHATACLRST DFISQSHVKV FLPVAYAKSV CVCVCV
001: MAAAVASGIA PTTAMVDQVI PNQPTVAAAA PPPFPAVSQV AAVAAAAAAA EALQTHPNSS LYVGDLDPSV NESHLLDLFN QVAPVHNLRV CRDLTHRSLG
101: YAYVNFANPE DASRAMESLN YAPIRDRPIR IMLSNRDPST RLSGKGNVFI KNLDASIDNK ALYETFSSFG TILSCKVAMD VVGRSKGYGF VQFEKEETAQ
201: AAIDKLNGML LNDKQVFVGH FVRRQDRARS ESGAVPSFTN VYVKNLPKEI TDDELKKTFG KYGDISSAVV MKDQSGNSRS FGFVNFVSPE AAAVAVEKMN
301: GISLGEDVLY VGRAQKKSDR EEELRRKFEQ ERISRFEKLQ GSNLYLKNLD DSVNDEKLKE MFSEYGNVTS CKVMMNSQGL SRGFGFVAYS NPEEALLAMK
401: EMNGKMIGRK PLYVALAQRK EERQAHLQSL FTQIRSPGTM SPVPSPMSGF HHHPPGGPMS GPHHPMFIGH NGQGLVPSQP MGYGYQVQFM PGMRPGAGPP
501: NFMMPFPLQR QTQPGPRVGF RRGANNMQQQ FQQQQMLQQN ASRFMGGAGN RRNGMEASAP QGIIPLPLNA SANSHNAPQR SHKPTPLTIS KLASDLALAS
601: PDKHPRMLGD HLYPLVEQQE PANAAKVTGM LLEMDQAEIL HLLESPEALK AKVSEALDVL RRSADPAAVS SVDDQFALSS SE
101: YAYVNFANPE DASRAMESLN YAPIRDRPIR IMLSNRDPST RLSGKGNVFI KNLDASIDNK ALYETFSSFG TILSCKVAMD VVGRSKGYGF VQFEKEETAQ
201: AAIDKLNGML LNDKQVFVGH FVRRQDRARS ESGAVPSFTN VYVKNLPKEI TDDELKKTFG KYGDISSAVV MKDQSGNSRS FGFVNFVSPE AAAVAVEKMN
301: GISLGEDVLY VGRAQKKSDR EEELRRKFEQ ERISRFEKLQ GSNLYLKNLD DSVNDEKLKE MFSEYGNVTS CKVMMNSQGL SRGFGFVAYS NPEEALLAMK
401: EMNGKMIGRK PLYVALAQRK EERQAHLQSL FTQIRSPGTM SPVPSPMSGF HHHPPGGPMS GPHHPMFIGH NGQGLVPSQP MGYGYQVQFM PGMRPGAGPP
501: NFMMPFPLQR QTQPGPRVGF RRGANNMQQQ FQQQQMLQQN ASRFMGGAGN RRNGMEASAP QGIIPLPLNA SANSHNAPQR SHKPTPLTIS KLASDLALAS
601: PDKHPRMLGD HLYPLVEQQE PANAAKVTGM LLEMDQAEIL HLLESPEALK AKVSEALDVL RRSADPAAVS SVDDQFALSS SE
Arabidopsis Description
PAB5Polyadenylate-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q05196]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.