Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0008g02930.t01 | Wine grape | nucleus | 77.09 | 78.84 |
| KRH61952 | Soybean | mitochondrion | 77.09 | 73.65 |
| KRH52613 | Soybean | nucleus | 78.82 | 73.56 |
| TraesCS7D01G250300.1 | Wheat | mitochondrion, nucleus | 75.12 | 68.23 |
| TraesCS7A01G252200.1 | Wheat | mitochondrion, nucleus | 74.88 | 68.01 |
| TraesCS7B01G138700.1 | Wheat | mitochondrion, nucleus | 74.88 | 68.01 |
| EES15356 | Sorghum | nucleus | 74.38 | 67.56 |
| GSMUA_Achr6P11660_001 | Banana | mitochondrion | 70.2 | 67.38 |
| Os08t0520300-01 | Rice | nucleus | 73.65 | 66.89 |
| GSMUA_Achr10P... | Banana | mitochondrion | 69.95 | 66.82 |
| Zm00001d031525_P004 | Maize | nucleus | 74.14 | 64.59 |
| GSMUA_Achr3P02150_001 | Banana | mitochondrion, nucleus | 68.72 | 64.29 |
| GSMUA_Achr11P... | Banana | nucleus | 69.21 | 63.29 |
| Zm00001d049759_P003 | Maize | nucleus | 70.44 | 62.45 |
| HORVU7Hr1G052090.3 | Barley | nucleus | 74.38 | 61.13 |
| GSMUA_Achr2P21780_001 | Banana | nucleus, plastid | 68.97 | 56.45 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 23.89 | 30.99 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 23.15 | 30.13 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 22.41 | 29.17 |
| GSMUA_Achr6P29410_001 | Banana | nucleus | 23.4 | 28.96 |
| GSMUA_Achr10P... | Banana | nucleus | 22.17 | 28.66 |
| GSMUA_Achr9P24980_001 | Banana | cytosol | 22.91 | 28.1 |
| GSMUA_Achr8P31320_001 | Banana | nucleus | 25.37 | 25.75 |
| GSMUA_Achr8P03580_001 | Banana | cytosol, mitochondrion, nucleus | 24.14 | 24.08 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 23.89 | 24.07 |
| GSMUA_Achr10P... | Banana | nucleus | 24.63 | 23.04 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 6.9 | 19.05 |
| GSMUA_Achr5P20140_001 | Banana | nucleus | 16.01 | 17.76 |
| GSMUA_Achr4P00840_001 | Banana | cytosol | 18.97 | 15.91 |
| GSMUA_Achr4P20270_001 | Banana | cytosol | 23.4 | 14.77 |
| GSMUA_Achr9P00990_001 | Banana | cytosol | 23.15 | 14.44 |
| GSMUA_AchrUn_... | Banana | cytosol | 22.91 | 14.26 |
| GSMUA_Achr4P09890_001 | Banana | cytosol | 22.91 | 14.26 |
| GSMUA_Achr8P24250_001 | Banana | cytosol, plastid | 21.18 | 13.27 |
| GSMUA_Achr9P10860_001 | Banana | cytosol | 21.92 | 12.45 |
| GSMUA_Achr5P24940_001 | Banana | plastid | 19.95 | 12.16 |
| GSMUA_Achr7P05430_001 | Banana | nucleus | 23.15 | 10.4 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P14120_001 | EnsemblPlants:GSMUA_Achr9T14120_001 | EnsemblPlantsGene:GSMUA_Achr9G14120_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44160 | PANTHER:PTHR44160:SF2 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002949CB6 | UniProt:M0U070 | MapMan:16.9.3 | : |
Description
Putative Nucleolysin TIAR [Source:GMGC_GENE;Acc:GSMUA_Achr9G14120_001]
Coordinates
chr9:+:9180316..9187001
Molecular Weight (calculated)
44149.0 Da
IEP (calculated)
6.731
GRAVY (calculated)
-0.353
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQQQQLYHS GVLAAAMSQM EPVPSGNLPP GFDPSTCRSV YVGNIHPNVT ESLLAEVFQS FGPLEGCKLI RKEKSSFGFV DYHDRRSAAL AIMSLHGRQL
101: YGQAIKVNWA YASGQREDTS GHFHIFVGDL SSEVTDATLF ACFSVYSSCS DARVMWDNKT GRSRGFGFVS FRDQQDAQNA INDMTGKWLG SRQIRCNWAT
201: KTTGEDKQQS DNQNAVVLTE GTDGGQENSN EMAPENNPAY TTVYVGNLAH EVSQVELHRQ FHILGAGVIE EVRIQRDKGF GFVRYRTHEE AALAIQMANG
301: RIICGKSMKC SWGTKPTPPG TASNPLPPPL PPFQLLPTPG LQGFTAAELL AYQRQLALSQ VAAGPMAGQH GLAAQPSAGL MSGGGSQAMY DGYSSLSSAQ
401: QLMYYN
101: YGQAIKVNWA YASGQREDTS GHFHIFVGDL SSEVTDATLF ACFSVYSSCS DARVMWDNKT GRSRGFGFVS FRDQQDAQNA INDMTGKWLG SRQIRCNWAT
201: KTTGEDKQQS DNQNAVVLTE GTDGGQENSN EMAPENNPAY TTVYVGNLAH EVSQVELHRQ FHILGAGVIE EVRIQRDKGF GFVRYRTHEE AALAIQMANG
301: RIICGKSMKC SWGTKPTPPG TASNPLPPPL PPFQLLPTPG LQGFTAAELL AYQRQLALSQ VAAGPMAGQH GLAAQPSAGL MSGGGSQAMY DGYSSLSSAQ
401: QLMYYN
001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ
Arabidopsis Description
UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.