Factsheet for Zm00001d049759_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G252200.1	Wheat	mitochondrion, nucleus	86.24	88.37
Os08t0520300-01	Rice	nucleus	86.03	88.14
TraesCS7B01G138700.1	Wheat	mitochondrion, nucleus	85.81	87.92
TraesCS7D01G250300.1	Wheat	mitochondrion, nucleus	85.59	87.7
Zm00001d031525_P004	Maize	nucleus	88.65	87.12
HORVU7Hr1G052090.3	Barley	nucleus	85.59	79.35
GSMUA_Achr9P14120_001	Banana	nucleus	62.45	70.44
VIT_04s0008g02930.t01	Wine grape	nucleus	57.21	66.0
KRH61952	Soybean	mitochondrion	61.14	65.88
KRH52613	Soybean	nucleus	61.79	65.06
Zm00001d048824_P004	Maize	nucleus	53.93	55.26
Zm00001d026528_P001	Maize	plastid	25.55	53.18
Zm00001d026522_P001	Maize	nucleus	23.8	44.67
Zm00001d010739_P001	Maize	mitochondrion	7.42	27.42
Zm00001d009512_P001	Maize	mitochondrion	7.86	27.27
Zm00001d018546_P001	Maize	endoplasmic reticulum, extracellular	7.86	25.35
Zm00001d013812_P001	Maize	nucleus	22.27	25.12
Zm00001d007929_P002	Maize	nucleus	17.9	22.84
Zm00001d020748_P002	Maize	plasma membrane	21.18	22.4
Zm00001d050838_P001	Maize	plastid	20.74	22.09
Zm00001d026346_P002	Maize	extracellular	20.31	21.73
Zm00001d021633_P006	Maize	nucleus	22.05	21.72
Zm00001d049416_P001	Maize	extracellular, nucleus	21.4	21.49
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	19.87	21.46
Zm00001d002244_P003	Maize	nucleus	20.52	20.98
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	20.74	20.04
Zm00001d021149_P001	Maize	cytosol	7.21	20.0
Zm00001d006496_P004	Maize	nucleus	22.05	18.6
Zm00001d025551_P002	Maize	plastid	18.12	18.36
Zm00001d014094_P002	Maize	extracellular, plasma membrane	13.1	16.81
Zm00001d032807_P001	Maize	nucleus	13.1	16.71
Zm00001d016252_P001	Maize	nucleus	13.54	16.49
Zm00001d025801_P005	Maize	cytosol, plastid	19.87	13.96
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	19.21	13.5
Zm00001d017181_P001	Maize	mitochondrion, nucleus, plastid	7.86	13.43
Zm00001d005276_P007	Maize	cytosol	17.9	12.54
Zm00001d019824_P004	Maize	cytosol	17.69	12.35
Zm00001d046487_P001	Maize	cytosol	16.81	11.98
Zm00001d047790_P001	Maize	plastid	19.0	11.84
Zm00001d027869_P002	Maize	nucleus	17.69	10.62

Protein Annotations

EntrezGene:100282356	MapMan:16.9.3	Gene3D:3.30.70.330	UniProt:A0A1D6PXR9	ProteinID:AQK51288.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44160	PANTHER:PTHR44160:SF2	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0008441904	EnsemblPlantsGene:Zm00001d049759	EnsemblPlants:Zm00001d049759_P003
EnsemblPlants:Zm00001d049759_T003	SEG:seg	:	:	:	:

Description

Oligouridylate-binding protein 1C

Coordinates

chr4:+:43385369..43395876

Molecular Weight (calculated)

49890.3 Da

IEP (calculated)

7.641

GRAVY (calculated)

-0.532

Length

458 amino acids

Sequence
(BLAST)

001: MNGTGGSHHQ QQHRLRQQQQ QQALLMQQAL QQQQQQHQYQ SGVLAAAAAA AMTQMEPISN GNLPPGFDPS TCRSVYVGNV NPNVTESLLI EVFQSAGLVE
101: RCKLIRKEKS SFGFVDYYDR RSAALAIMTL HGRHIYGQAI KVNWAYASTQ REDTSGHFHI FVGDLSSEVN DATLYACFSA YPSCSQQQHA TMWLNAARPR
201: WRRELPESDK AGQSGMRRTE AETAITEMTG KWLGSRQIRC NWATKTNSEE KPETDNHNAV VLTNGSSTNS ATDASQDAGS KENPENNPDC TTVYVGNLGH
301: EVNRDELHRH FYNLGVGAIE EIRVQQDKGF GFVRYSTHGE AALAIQMANG LVVRGKSIKC SWGNKPTPPG TTSKPLPPPV ASYQPAVAMS GVPQGFTAAE
401: LLAYQRQLAL SQAAAGQIAG QHGLAGQVSA GLLAAAGSQA LYDGYPNQSS AQQLMYYN

Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)

001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ

Arabidopsis Description

UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.