Factsheet for Zm00001d046487_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89984	Sorghum	plastid	82.27	83.84
TraesCS3D01G076800.1	Wheat	mitochondrion	22.24	57.43
TraesCS3D01G076700.1	Wheat	mitochondrion	37.01	53.48
TraesCS3A01G076800.1	Wheat	mitochondrion, nucleus, plasma membrane, plastid	44.79	51.61
Os06t0589700-01	Rice	cytosol, extracellular	30.64	49.37
TraesCS3B01G090800.1	Wheat	mitochondrion	47.43	48.8
Zm00001d005276_P007	Maize	cytosol	43.7	42.97
Zm00001d019824_P004	Maize	cytosol	43.7	42.84
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	43.08	42.48
Zm00001d025801_P005	Maize	cytosol, plastid	42.3	41.72
Zm00001d047790_P001	Maize	plastid	37.64	32.93
Zm00001d014094_P002	Maize	extracellular, plasma membrane	14.15	25.49
Zm00001d032807_P001	Maize	nucleus	14.0	25.07
Zm00001d009512_P001	Maize	mitochondrion	4.98	24.24
Zm00001d021149_P001	Maize	cytosol	6.07	23.64
Zm00001d018546_P001	Maize	endoplasmic reticulum, extracellular	4.98	22.54
Zm00001d007929_P002	Maize	nucleus	12.13	21.73
Zm00001d013812_P001	Maize	nucleus	13.69	21.67
Zm00001d020748_P002	Maize	plasma membrane	14.46	21.48
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	14.15	21.46
Zm00001d010739_P001	Maize	mitochondrion	4.04	20.97
Zm00001d026346_P002	Maize	extracellular	13.69	20.56
Zm00001d002244_P003	Maize	nucleus	14.0	20.09
Zm00001d026528_P001	Maize	plastid	6.84	20.0
Zm00001d050838_P001	Maize	plastid	13.22	19.77
Zm00001d025551_P002	Maize	plastid	13.69	19.47
Zm00001d049416_P001	Maize	extracellular, nucleus	13.22	18.64
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	13.69	18.57
Zm00001d021633_P006	Maize	nucleus	13.37	18.49
Zm00001d031525_P004	Maize	nucleus	13.22	18.24
Zm00001d048824_P004	Maize	nucleus	12.44	17.9
Zm00001d049759_P003	Maize	nucleus	11.98	16.81
Zm00001d006496_P004	Maize	nucleus	14.0	16.57
Zm00001d016252_P001	Maize	nucleus	8.86	15.16
Zm00001d026522_P001	Maize	nucleus	4.82	12.7
Zm00001d017181_P001	Maize	mitochondrion, nucleus, plastid	4.35	10.45
Zm00001d027869_P002	Maize	nucleus	12.13	10.22

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	ProteinID:AQL04381.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	UniProt:K7WAC5	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom
InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102	PFscan:PS51309
PANTHER:PTHR24012	PANTHER:PTHR24012:SF620	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360
SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI0002214608
EnsemblPlantsGene:Zm00001d046487	EnsemblPlants:Zm00001d046487_P001	EnsemblPlants:Zm00001d046487_T001	SEG:seg	:	:

Description

Polyadenylate-binding protein 3

Coordinates

chr9:+:92061260..92065306

Molecular Weight (calculated)

68771.4 Da

IEP (calculated)

9.789

GRAVY (calculated)

-0.268

Length

643 amino acids

Sequence
(BLAST)

001: MASPSTTPSA PIAAEVVPVA EGTPAAVLPP LGSMASLYVG DLAETVDEPQ LHALFSQVAP VATVRVCRDI LSGVSLGYGY VNFYSRQEAT RALEALNFTP
101: LIGKYIRVMF SNRDPSLRKS GRANLFVKNL EPNIDSKNLY EIFSSFGAIL SCKVATDSAG QSKGYGFVQY ETEESAEAAI NGLNGMLANN RKMFVGLHMR
201: RRDREVKFTN VYIKNLPTEF SEDDLRQEFA PFGEITSAVV MRDADGASKC FGFVNFKKPE FAIEAVEKAN GKAIGDKTLY VGRAQKKEER KAELKTRFGR
301: GRDNKVDKPN GINLYLKNID DGINDEGLKK LFEEFGQVAS CKVMVDARGR SKGSGFVSFA TAEAGQRAIN RMNGRIVGKK PLYVGLAQPK EERKAMLMAH
401: FAQRNLAMAA SQYAGPQQVY FGHPSSPGPI APPQGAVFGF PQHFVPGMGP ISPVMMPPHN MQRPRYPGPA PYRQQQAMIH ANANHMPNAR PGPYPAMPPQ
501: AFPGAGATAW QQHAVSRTTT AVASAGPADQ HQILGNKLYA LVEQLERDHA GKVTGMLLEM DKAEILQLLR SPEALRAKVR EAMAVLQRTK AGGSVDPAAA
601: AAVAKAGDSA ADPPPAAAAA AAAVKAGSSA DPGAAAAAPT VNA

Best Arabidopsis Sequence Match ( AT1G22760.1 )
(BLAST)

001: MAAAVATGVA PATMVDQVPS PTAQTSVQVP VSIPLPSPVV VADQTHPNSS LYAGDLDPKV TEAHLFDLFK HVANVVSVRV CRDQNRRSLG YAYINFSNPN
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD

Arabidopsis Description

PAB3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64380]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.