Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES05289 | Sorghum | plastid | 93.26 | 92.18 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 54.88 | 91.12 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 77.44 | 87.86 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 82.09 | 84.65 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 81.63 | 84.17 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 88.14 | 79.96 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 82.33 | 77.63 |
| Zm00001d025551_P002 | Maize | plastid | 77.21 | 73.45 |
| GSMUA_Achr10P... | Banana | nucleus | 48.37 | 66.24 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 47.67 | 65.5 |
| Zm00001d020748_P002 | Maize | plasma membrane | 60.7 | 60.28 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 58.84 | 59.67 |
| Bra027446.1-P | Field mustard | cytosol | 42.33 | 56.88 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 52.79 | 56.33 |
| PGSC0003DMT400020621 | Potato | nucleus | 51.86 | 56.31 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 19.07 | 55.78 |
| KRH61258 | Soybean | nucleus | 52.56 | 55.26 |
| KRH05723 | Soybean | nucleus | 52.33 | 54.48 |
| KRH51956 | Soybean | nucleus | 50.7 | 53.04 |
| VIT_18s0001g11080.t01 | Wine grape | nucleus | 51.16 | 52.63 |
| Zm00001d009512_P001 | Maize | mitochondrion | 16.05 | 52.27 |
| KRH15315 | Soybean | nucleus | 51.63 | 52.24 |
| Solyc04g079310.2.1 | Tomato | nucleus | 53.49 | 51.0 |
| Zm00001d018546_P001 | Maize | endoplasmic reticulum, extracellular | 16.74 | 50.7 |
| CDY06734 | Canola | mitochondrion | 35.12 | 49.51 |
| AT1G47500.1 | Thale cress | nucleus | 49.3 | 48.85 |
| Bra018813.1-P | Field mustard | mitochondrion, nucleus | 43.95 | 48.46 |
| CDY52067 | Canola | nucleus | 46.74 | 47.97 |
| CDX95176 | Canola | nucleus | 46.74 | 47.97 |
| AT1G47490.1 | Thale cress | nucleus | 47.91 | 47.69 |
| Solyc01g108500.2.1 | Tomato | nucleus | 45.58 | 47.46 |
| PGSC0003DMT400066648 | Potato | nucleus | 46.05 | 47.14 |
| Zm00001d010739_P001 | Maize | mitochondrion | 13.49 | 46.77 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 44.88 | 46.62 |
| Zm00001d013812_P001 | Maize | nucleus | 43.49 | 46.06 |
| CDY32840 | Canola | nucleus | 44.65 | 45.61 |
| CDY16528 | Canola | nucleus | 44.88 | 45.52 |
| KRH50251 | Soybean | nucleus | 45.58 | 45.48 |
| KRH71168 | Soybean | nucleus | 45.58 | 45.48 |
| CDY28101 | Canola | nucleus | 45.35 | 45.45 |
| CDY50959 | Canola | nucleus | 45.12 | 45.12 |
| Solyc10g050860.1.1 | Tomato | nucleus | 44.88 | 45.09 |
| CDY29341 | Canola | nucleus | 43.72 | 44.87 |
| CDY68866 | Canola | nucleus | 42.33 | 43.86 |
| CDX99265 | Canola | nucleus | 43.02 | 43.63 |
| Bra040663.1-P | Field mustard | nucleus | 37.67 | 43.55 |
| CDX92304 | Canola | nucleus | 42.79 | 43.4 |
| CDY22988 | Canola | nucleus | 42.33 | 43.33 |
| Bra022389.1-P | Field mustard | nucleus | 42.79 | 43.19 |
| Zm00001d026346_P002 | Maize | extracellular | 42.79 | 42.99 |
| AT3G19130.1 | Thale cress | nucleus | 43.49 | 42.99 |
| CDX82310 | Canola | nucleus | 40.7 | 42.48 |
| Bra001735.1-P | Field mustard | nucleus | 40.7 | 42.48 |
| CDX95462 | Canola | nucleus | 42.79 | 42.4 |
| CDY18570 | Canola | nucleus | 42.56 | 42.17 |
| Zm00001d049416_P001 | Maize | extracellular, nucleus | 43.95 | 41.45 |
| Zm00001d002244_P003 | Maize | nucleus | 42.79 | 41.07 |
| Zm00001d021149_P001 | Maize | cytosol | 15.58 | 40.61 |
| Zm00001d007929_P002 | Maize | nucleus | 33.72 | 40.39 |
| AT1G49600.3 | Thale cress | nucleus | 41.86 | 40.0 |
| Bra037538.1-P | Field mustard | nucleus | 36.74 | 39.21 |
| Zm00001d021633_P006 | Maize | nucleus | 41.63 | 38.49 |
| Zm00001d006496_P004 | Maize | nucleus | 42.09 | 33.33 |
| Zm00001d016252_P001 | Maize | nucleus | 26.28 | 30.05 |
| Bra014216.1-P | Field mustard | nucleus | 39.3 | 29.55 |
| Zm00001d026528_P001 | Maize | plastid | 13.49 | 26.36 |
| Zm00001d017181_P001 | Maize | mitochondrion, nucleus, plastid | 14.65 | 23.51 |
| Zm00001d031525_P004 | Maize | nucleus | 25.12 | 23.18 |
| Zm00001d048824_P004 | Maize | nucleus | 23.49 | 22.6 |
| Zm00001d027869_P002 | Maize | nucleus | 39.77 | 22.41 |
| Zm00001d049759_P003 | Maize | nucleus | 22.09 | 20.74 |
| Zm00001d026522_P001 | Maize | nucleus | 10.7 | 18.85 |
| Zm00001d014094_P002 | Maize | extracellular, plasma membrane | 14.42 | 17.37 |
| Zm00001d032807_P001 | Maize | nucleus | 14.19 | 16.99 |
| Zm00001d046487_P001 | Maize | cytosol | 19.77 | 13.22 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 19.53 | 12.88 |
| Zm00001d005276_P007 | Maize | cytosol | 19.3 | 12.69 |
| Zm00001d019824_P004 | Maize | cytosol | 19.3 | 12.65 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 18.37 | 12.12 |
| Zm00001d047790_P001 | Maize | plastid | 18.6 | 10.88 |
Protein Annotations
| EntrezGene:103653663 | MapMan:16.9.4 | Gene3D:3.30.70.330 | ProteinID:AQK53132.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:K7UFY8 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF7 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00019625FD | EnsemblPlantsGene:Zm00001d050838 | EnsemblPlants:Zm00001d050838_P001 | EnsemblPlants:Zm00001d050838_T001 |
| SEG:seg | : | : | : | : | : |
Description
Polyadenylate-binding protein RBP47B
Coordinates
chr4:+:125848028..125857181
Molecular Weight (calculated)
46610.5 Da
IEP (calculated)
8.738
GRAVY (calculated)
-0.487
Length
430 amino acids
Sequence
(BLAST)
(BLAST)
001: MQMAAAVAPT DAPASASAAA APSRPHAHAA AAVAAASPHP HALHPHHHMP QPRWVVIPYP PPHHPMVAAP PPPSLQFVKH FTPPSSVTPP PPTGSGGNGG
101: EDNRTIWVGD LQYWMDENYL HSCFGSSGEV VNIKVIRNRH SGVSEGYGFI EFYTHVSAEK ALQNFSGHVM PNTDRAFKLN WASYSMGEKR SEISSDHSIF
201: VGDLAVDVTD AMLLELFSNK YRSVKGAKVI IDANTGRSRG YGFVRFGDDN DKIHAMTEMN GVYCSTRPIR VGPATPRRSQ GDSGTSPPRQ SHVDSTNRTV
301: YVGGLDPNVS EDELRKAFAK YGDLASVKIP FGKQCGFVQF VNRVDAEEAL HGLNGSTIGK QAVRLSWGRS PASKQSRGDS GHRRNGNCNG MYYGTPFYGG
401: YGYASPIPHP NMYAAAYEAY PYYGNQQLVS
101: EDNRTIWVGD LQYWMDENYL HSCFGSSGEV VNIKVIRNRH SGVSEGYGFI EFYTHVSAEK ALQNFSGHVM PNTDRAFKLN WASYSMGEKR SEISSDHSIF
201: VGDLAVDVTD AMLLELFSNK YRSVKGAKVI IDANTGRSRG YGFVRFGDDN DKIHAMTEMN GVYCSTRPIR VGPATPRRSQ GDSGTSPPRQ SHVDSTNRTV
301: YVGGLDPNVS EDELRKAFAK YGDLASVKIP FGKQCGFVQF VNRVDAEEAL HGLNGSTIGK QAVRLSWGRS PASKQSRGDS GHRRNGNCNG MYYGTPFYGG
401: YGYASPIPHP NMYAAAYEAY PYYGNQQLVS
001: MADVKVQSES ESSDSHPLVD YQSLPPYPPP HPPVEVEENQ PKTSPTPPPP HWMRYPPVLM PQMMYAPPPP MPFSPYHQYP NHHHFHHQSR GNKHQNAFNG
101: ENKTIWVGDL QNWMDEAYLN SAFTSAEERE IVSLKVIRNK HNGSSEGYGF VEFESHDVAD KVLQEFNGAP MPNTDQPFRL NWASFSTGEK RLENNGPDLS
201: IFVGDLAPDV SDALLHETFS EKYPSVKAAK VVLDANTGRS KGYGFVRFGD ENERTKAMTE MNGVKCSSRA MRIGPATPRK TNGYQQQGGY MPSGAFTRSE
301: GDTINTTIFV GGLDSSVTDE DLKQPFSEFG EIVSVKIPVG KGCGFVQFVN RPNAEEALEK LNGTVIGKQT VRLSWGRNPA NKQPRDKYGN QWVDPYYGGQ
401: FYNGYGYMVP QPDPRMYPAA PYYPMYGGHQ QQVS
101: ENKTIWVGDL QNWMDEAYLN SAFTSAEERE IVSLKVIRNK HNGSSEGYGF VEFESHDVAD KVLQEFNGAP MPNTDQPFRL NWASFSTGEK RLENNGPDLS
201: IFVGDLAPDV SDALLHETFS EKYPSVKAAK VVLDANTGRS KGYGFVRFGD ENERTKAMTE MNGVKCSSRA MRIGPATPRK TNGYQQQGGY MPSGAFTRSE
301: GDTINTTIFV GGLDSSVTDE DLKQPFSEFG EIVSVKIPVG KGCGFVQFVN RPNAEEALEK LNGTVIGKQT VRLSWGRNPA NKQPRDKYGN QWVDPYYGGQ
401: FYNGYGYMVP QPDPRMYPAA PYYPMYGGHQ QQVS
Arabidopsis Description
RBP47C'Polyadenylate-binding protein RBP47C' [Source:UniProtKB/Swiss-Prot;Acc:Q9SX80]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.