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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • mitochondrion 2
  • plastid 1
  • cytosol 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY52067 Canola nucleus 100.0 76.37
GSMUA_Achr9P15210_001 Banana nucleus 61.88 63.46
GSMUA_Achr3P06840_001 Banana nucleus 60.31 61.86
GSMUA_Achr10P... Banana nucleus 59.38 60.51
GSMUA_Achr6P10190_001 Banana nucleus 59.06 60.38
Os02t0567900-01 Rice cytosol, nucleus 47.19 58.3
TraesCS5D01G250100.1 Wheat nucleus 60.94 57.02
TraesCS5B01G241400.1 Wheat nucleus 60.94 57.02
TraesCS5A01G243500.1 Wheat nucleus 60.62 56.73
PGSC0003DMT400020621 Potato nucleus 69.38 56.06
VIT_18s0001g11080.t01 Wine grape nucleus 71.56 54.78
KRH61258 Soybean nucleus 66.88 52.32
KRH05723 Soybean nucleus 67.5 52.3
KRH51956 Soybean nucleus 65.62 51.09
Bra018813.1-P Field mustard mitochondrion, nucleus 61.56 50.51
KRH15315 Soybean nucleus 66.88 50.35
TraesCS6A01G204400.1 Wheat mitochondrion 57.81 48.81
Solyc04g079310.2.1 Tomato nucleus 68.75 48.78
Os04t0449900-01 Rice plastid 58.12 48.06
Zm00001d005912_P001 Maize cytosol, nucleus, peroxisome, plastid 61.88 46.7
Zm00001d020748_P002 Maize plasma membrane 61.88 45.73
KXG35789 Sorghum nucleus 62.5 45.66
GSMUA_Achr3P01720_001 Banana mitochondrion 57.5 45.66
HORVU5Hr1G069180.3 Barley nucleus, peroxisome, plastid 60.94 45.03
Os09t0462700-01 Rice mitochondrion, nucleus, plastid 61.56 44.67
HORVU6Hr1G048390.1 Barley cytoskeleton, nucleus, peroxisome 57.81 44.36
TraesCS6D01G184600.1 Wheat cytosol, nucleus, plastid 57.81 44.36
EES10898 Sorghum nucleus 58.44 44.21
Bra001735.1-P Field mustard nucleus 56.88 44.17
Bra022389.1-P Field mustard nucleus 57.81 43.43
TraesCS2D01G315400.2 Wheat plastid 57.5 43.4
TraesCS2A01G317700.2 Wheat plastid 57.5 43.4
TraesCS2B01G335700.1 Wheat plastid 56.56 43.1
EES05289 Sorghum plastid 58.44 42.99
HORVU2Hr1G078910.4 Barley mitochondrion, nucleus 57.19 42.86
Bra040663.1-P Field mustard nucleus 49.38 42.47
Zm00001d050838_P001 Maize plastid 56.88 42.33
Bra031774.1-P Field mustard nucleus 50.94 41.37
Bra019078.1-P Field mustard nucleus 53.12 41.26
Bra002947.1-P Field mustard nucleus 50.94 41.16
TraesCS6B01G228100.1 Wheat endoplasmic reticulum, plastid, vacuole 58.12 40.79
Zm00001d025551_P002 Maize plastid 55.94 39.6
GSMUA_Achr6P09470_001 Banana nucleus 18.12 39.46
Zm00001d016897_P002 Maize endoplasmic reticulum, nucleus, peroxisome, plastid 58.44 39.45
Bra010418.1-P Field mustard nucleus 45.62 38.62
Bra037538.1-P Field mustard nucleus 48.44 38.46
Bra026387.1-P Field mustard nucleus 45.94 37.4
Bra002230.1-P Field mustard nucleus 48.44 36.99
Bra006502.1-P Field mustard nucleus 49.38 36.74
Bra014216.1-P Field mustard nucleus 51.25 28.67
Bra034301.1-P Field mustard mitochondrion 7.5 21.62
Bra030985.1-P Field mustard mitochondrion, nucleus 28.12 21.53
Bra030908.1-P Field mustard nucleus 25.94 19.81
Bra037962.1-P Field mustard nucleus 25.62 19.48
Bra039603.1-P Field mustard nucleus 17.81 15.66
Bra037217.1-P Field mustard nucleus 18.44 15.49
Bra032172.1-P Field mustard cytosol 30.0 14.91
Bra011488.1-P Field mustard cytosol, plastid 28.12 14.68
Bra034603.1-P Field mustard cytosol, plastid 28.12 14.54
Bra013104.1-P Field mustard cytosol 27.19 14.12
Bra039195.1-P Field mustard cytosol, nucleus, plastid 27.5 14.06
Bra018797.1-P Field mustard cytosol 28.12 13.78
Bra016371.1-P Field mustard plastid 25.0 13.45
Bra027167.1-P Field mustard cytosol, nucleus, peroxisome, plastid 20.94 12.84
Bra015220.1-P Field mustard cytosol 22.5 12.46
Bra022413.1-P Field mustard cytosol 17.19 12.33
Bra003915.1-P Field mustard cytosol 24.06 11.88
Bra016118.1-P Field mustard plastid 24.69 11.55
Bra007984.1-P Field mustard plastid 22.5 11.54
Bra039841.1-P Field mustard cytosol 4.69 7.04
Protein Annotations
EnsemblPlants:Bra027446.1EnsemblPlants:Bra027446.1-PEnsemblPlantsGene:Bra027446Gene3D:3.30.70.330GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0005488InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfInterPro:RBD_domain_sf
InterPro:RRM_domPANTHER:PTHR43955PANTHER:PTHR43955:SF5PFAM:PF00076PFscan:PS50102SEG:seg
SMART:SM00360SUPFAM:SSF54928UniParc:UPI0002542168UniProt:M4EF84MapMan:16.9.4:
Description
AT1G47500 (E=1e-126) ATRBP47C' | ATRBP47C' (RNA-binding protein 47C'); RNA binding
Coordinates
chrA09:+:14256949..14258906
Molecular Weight (calculated)
35181.4 Da
IEP (calculated)
6.518
GRAVY (calculated)
-0.555
Length
320 amino acids
Sequence
(BLAST)
001: MDENYLNSCF APAGEMASVK VIRNKHTGLS EGYGFVEFDS HDIAEKVLQD FNGVTMLQSD QPYRLNWASF STGEKRLENG PDHSIFVGDL APEVTDELLH
101: KLFFDKYPSV KTAKVVIDGT TGRSKGYGFV RFGDDGERSK ALVEMNGVKC CSRAMRVGAA TPRKPNGYQH QGGGAAPRDG DSLNTTIFVG GLDADVTDEV
201: LRQPFAGFGE IVSVKIPVGK GCGFIQFVNR ENAEEALEKL NGSVIGKQTV RLSWGRNQGN KQPRGGYGDQ WVEPFYRGQY YNGYGYMPLP PPIDPRMYGA
301: APYGGYPMYG GHQQQQQQVS
Best Arabidopsis Sequence Match ( AT1G47500.1 )
(BLAST)
001: MADVKVQSES ESSDSHPLVD YQSLPPYPPP HPPVEVEENQ PKTSPTPPPP HWMRYPPVLM PQMMYAPPPP MPFSPYHQYP NHHHFHHQSR GNKHQNAFNG
101: ENKTIWVGDL QNWMDEAYLN SAFTSAEERE IVSLKVIRNK HNGSSEGYGF VEFESHDVAD KVLQEFNGAP MPNTDQPFRL NWASFSTGEK RLENNGPDLS
201: IFVGDLAPDV SDALLHETFS EKYPSVKAAK VVLDANTGRS KGYGFVRFGD ENERTKAMTE MNGVKCSSRA MRIGPATPRK TNGYQQQGGY MPSGAFTRSE
301: GDTINTTIFV GGLDSSVTDE DLKQPFSEFG EIVSVKIPVG KGCGFVQFVN RPNAEEALEK LNGTVIGKQT VRLSWGRNPA NKQPRDKYGN QWVDPYYGGQ
401: FYNGYGYMVP QPDPRMYPAA PYYPMYGGHQ QQVS
Arabidopsis Description
RBP47C'Polyadenylate-binding protein RBP47C' [Source:UniProtKB/Swiss-Prot;Acc:Q9SX80]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.