Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plastid 1
- cytosol 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY52067 | Canola | nucleus | 100.0 | 76.37 |
GSMUA_Achr9P15210_001 | Banana | nucleus | 61.88 | 63.46 |
GSMUA_Achr3P06840_001 | Banana | nucleus | 60.31 | 61.86 |
GSMUA_Achr10P... | Banana | nucleus | 59.38 | 60.51 |
GSMUA_Achr6P10190_001 | Banana | nucleus | 59.06 | 60.38 |
Os02t0567900-01 | Rice | cytosol, nucleus | 47.19 | 58.3 |
TraesCS5D01G250100.1 | Wheat | nucleus | 60.94 | 57.02 |
TraesCS5B01G241400.1 | Wheat | nucleus | 60.94 | 57.02 |
TraesCS5A01G243500.1 | Wheat | nucleus | 60.62 | 56.73 |
PGSC0003DMT400020621 | Potato | nucleus | 69.38 | 56.06 |
VIT_18s0001g11080.t01 | Wine grape | nucleus | 71.56 | 54.78 |
KRH61258 | Soybean | nucleus | 66.88 | 52.32 |
KRH05723 | Soybean | nucleus | 67.5 | 52.3 |
KRH51956 | Soybean | nucleus | 65.62 | 51.09 |
Bra018813.1-P | Field mustard | mitochondrion, nucleus | 61.56 | 50.51 |
KRH15315 | Soybean | nucleus | 66.88 | 50.35 |
TraesCS6A01G204400.1 | Wheat | mitochondrion | 57.81 | 48.81 |
Solyc04g079310.2.1 | Tomato | nucleus | 68.75 | 48.78 |
Os04t0449900-01 | Rice | plastid | 58.12 | 48.06 |
Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 61.88 | 46.7 |
Zm00001d020748_P002 | Maize | plasma membrane | 61.88 | 45.73 |
KXG35789 | Sorghum | nucleus | 62.5 | 45.66 |
GSMUA_Achr3P01720_001 | Banana | mitochondrion | 57.5 | 45.66 |
HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 60.94 | 45.03 |
Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 61.56 | 44.67 |
HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 57.81 | 44.36 |
TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 57.81 | 44.36 |
EES10898 | Sorghum | nucleus | 58.44 | 44.21 |
Bra001735.1-P | Field mustard | nucleus | 56.88 | 44.17 |
Bra022389.1-P | Field mustard | nucleus | 57.81 | 43.43 |
TraesCS2D01G315400.2 | Wheat | plastid | 57.5 | 43.4 |
TraesCS2A01G317700.2 | Wheat | plastid | 57.5 | 43.4 |
TraesCS2B01G335700.1 | Wheat | plastid | 56.56 | 43.1 |
EES05289 | Sorghum | plastid | 58.44 | 42.99 |
HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 57.19 | 42.86 |
Bra040663.1-P | Field mustard | nucleus | 49.38 | 42.47 |
Zm00001d050838_P001 | Maize | plastid | 56.88 | 42.33 |
Bra031774.1-P | Field mustard | nucleus | 50.94 | 41.37 |
Bra019078.1-P | Field mustard | nucleus | 53.12 | 41.26 |
Bra002947.1-P | Field mustard | nucleus | 50.94 | 41.16 |
TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 58.12 | 40.79 |
Zm00001d025551_P002 | Maize | plastid | 55.94 | 39.6 |
GSMUA_Achr6P09470_001 | Banana | nucleus | 18.12 | 39.46 |
Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 58.44 | 39.45 |
Bra010418.1-P | Field mustard | nucleus | 45.62 | 38.62 |
Bra037538.1-P | Field mustard | nucleus | 48.44 | 38.46 |
Bra026387.1-P | Field mustard | nucleus | 45.94 | 37.4 |
Bra002230.1-P | Field mustard | nucleus | 48.44 | 36.99 |
Bra006502.1-P | Field mustard | nucleus | 49.38 | 36.74 |
Bra014216.1-P | Field mustard | nucleus | 51.25 | 28.67 |
Bra034301.1-P | Field mustard | mitochondrion | 7.5 | 21.62 |
Bra030985.1-P | Field mustard | mitochondrion, nucleus | 28.12 | 21.53 |
Bra030908.1-P | Field mustard | nucleus | 25.94 | 19.81 |
Bra037962.1-P | Field mustard | nucleus | 25.62 | 19.48 |
Bra039603.1-P | Field mustard | nucleus | 17.81 | 15.66 |
Bra037217.1-P | Field mustard | nucleus | 18.44 | 15.49 |
Bra032172.1-P | Field mustard | cytosol | 30.0 | 14.91 |
Bra011488.1-P | Field mustard | cytosol, plastid | 28.12 | 14.68 |
Bra034603.1-P | Field mustard | cytosol, plastid | 28.12 | 14.54 |
Bra013104.1-P | Field mustard | cytosol | 27.19 | 14.12 |
Bra039195.1-P | Field mustard | cytosol, nucleus, plastid | 27.5 | 14.06 |
Bra018797.1-P | Field mustard | cytosol | 28.12 | 13.78 |
Bra016371.1-P | Field mustard | plastid | 25.0 | 13.45 |
Bra027167.1-P | Field mustard | cytosol, nucleus, peroxisome, plastid | 20.94 | 12.84 |
Bra015220.1-P | Field mustard | cytosol | 22.5 | 12.46 |
Bra022413.1-P | Field mustard | cytosol | 17.19 | 12.33 |
Bra003915.1-P | Field mustard | cytosol | 24.06 | 11.88 |
Bra016118.1-P | Field mustard | plastid | 24.69 | 11.55 |
Bra007984.1-P | Field mustard | plastid | 22.5 | 11.54 |
Bra039841.1-P | Field mustard | cytosol | 4.69 | 7.04 |
Protein Annotations
EnsemblPlants:Bra027446.1 | EnsemblPlants:Bra027446.1-P | EnsemblPlantsGene:Bra027446 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
InterPro:RRM_dom | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF5 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002542168 | UniProt:M4EF84 | MapMan:16.9.4 | : |
Description
AT1G47500 (E=1e-126) ATRBP47C' | ATRBP47C' (RNA-binding protein 47C'); RNA binding
Coordinates
chrA09:+:14256949..14258906
Molecular Weight (calculated)
35181.4 Da
IEP (calculated)
6.518
GRAVY (calculated)
-0.555
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MDENYLNSCF APAGEMASVK VIRNKHTGLS EGYGFVEFDS HDIAEKVLQD FNGVTMLQSD QPYRLNWASF STGEKRLENG PDHSIFVGDL APEVTDELLH
101: KLFFDKYPSV KTAKVVIDGT TGRSKGYGFV RFGDDGERSK ALVEMNGVKC CSRAMRVGAA TPRKPNGYQH QGGGAAPRDG DSLNTTIFVG GLDADVTDEV
201: LRQPFAGFGE IVSVKIPVGK GCGFIQFVNR ENAEEALEKL NGSVIGKQTV RLSWGRNQGN KQPRGGYGDQ WVEPFYRGQY YNGYGYMPLP PPIDPRMYGA
301: APYGGYPMYG GHQQQQQQVS
101: KLFFDKYPSV KTAKVVIDGT TGRSKGYGFV RFGDDGERSK ALVEMNGVKC CSRAMRVGAA TPRKPNGYQH QGGGAAPRDG DSLNTTIFVG GLDADVTDEV
201: LRQPFAGFGE IVSVKIPVGK GCGFIQFVNR ENAEEALEKL NGSVIGKQTV RLSWGRNQGN KQPRGGYGDQ WVEPFYRGQY YNGYGYMPLP PPIDPRMYGA
301: APYGGYPMYG GHQQQQQQVS
001: MADVKVQSES ESSDSHPLVD YQSLPPYPPP HPPVEVEENQ PKTSPTPPPP HWMRYPPVLM PQMMYAPPPP MPFSPYHQYP NHHHFHHQSR GNKHQNAFNG
101: ENKTIWVGDL QNWMDEAYLN SAFTSAEERE IVSLKVIRNK HNGSSEGYGF VEFESHDVAD KVLQEFNGAP MPNTDQPFRL NWASFSTGEK RLENNGPDLS
201: IFVGDLAPDV SDALLHETFS EKYPSVKAAK VVLDANTGRS KGYGFVRFGD ENERTKAMTE MNGVKCSSRA MRIGPATPRK TNGYQQQGGY MPSGAFTRSE
301: GDTINTTIFV GGLDSSVTDE DLKQPFSEFG EIVSVKIPVG KGCGFVQFVN RPNAEEALEK LNGTVIGKQT VRLSWGRNPA NKQPRDKYGN QWVDPYYGGQ
401: FYNGYGYMVP QPDPRMYPAA PYYPMYGGHQ QQVS
101: ENKTIWVGDL QNWMDEAYLN SAFTSAEERE IVSLKVIRNK HNGSSEGYGF VEFESHDVAD KVLQEFNGAP MPNTDQPFRL NWASFSTGEK RLENNGPDLS
201: IFVGDLAPDV SDALLHETFS EKYPSVKAAK VVLDANTGRS KGYGFVRFGD ENERTKAMTE MNGVKCSSRA MRIGPATPRK TNGYQQQGGY MPSGAFTRSE
301: GDTINTTIFV GGLDSSVTDE DLKQPFSEFG EIVSVKIPVG KGCGFVQFVN RPNAEEALEK LNGTVIGKQT VRLSWGRNPA NKQPRDKYGN QWVDPYYGGQ
401: FYNGYGYMVP QPDPRMYPAA PYYPMYGGHQ QQVS
Arabidopsis Description
RBP47C'Polyadenylate-binding protein RBP47C' [Source:UniProtKB/Swiss-Prot;Acc:Q9SX80]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.