Factsheet for Os04t0449900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 3
nucleus 1
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0567900-01	Rice	cytosol, nucleus	59.69	89.19
EES10898	Sorghum	nucleus	93.8	85.82
TraesCS2B01G335700.1	Wheat	plastid	90.96	83.81
TraesCS2D01G315400.2	Wheat	plastid	91.47	83.49
TraesCS2A01G317700.2	Wheat	plastid	91.21	83.25
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	84.24	76.35
Zm00001d025551_P002	Maize	plastid	88.89	76.11
GSMUA_Achr10P...	Banana	nucleus	55.56	68.47
GSMUA_Achr6P10190_001	Banana	nucleus	54.26	67.09
Bra027446.1-P	Field mustard	cytosol	48.06	58.12
GSMUA_Achr3P01720_001	Banana	mitochondrion	60.21	57.82
PGSC0003DMT400020621	Potato	nucleus	58.91	57.58
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	64.86	56.92
GSMUA_Achr6P09470_001	Banana	nucleus	21.45	56.46
KRH61258	Soybean	nucleus	59.17	55.99
KRH05723	Soybean	nucleus	58.66	54.96
KRH51956	Soybean	nucleus	57.36	54.01
VIT_18s0001g11080.t01	Wine grape	nucleus	58.14	53.83
KRH15315	Soybean	nucleus	58.14	52.94
Solyc01g108500.2.1	Tomato	nucleus	54.26	50.85
Solyc04g079310.2.1	Tomato	nucleus	59.17	50.78
CDY06734	Canola	mitochondrion	39.79	50.49
Bra018813.1-P	Field mustard	mitochondrion, nucleus	50.65	50.26
PGSC0003DMT400066648	Potato	nucleus	53.75	49.52
VIT_03s0063g00850.t01	Wine grape	nucleus	52.45	49.03
CDY52067	Canola	nucleus	52.71	48.69
CDX95176	Canola	nucleus	52.71	48.69
AT1G47500.1	Thale cress	nucleus	54.26	48.39
AT1G47490.1	Thale cress	nucleus	52.97	47.45
KRH71168	Soybean	nucleus	52.45	47.1
CDY32840	Canola	nucleus	50.65	46.56
CDY16528	Canola	nucleus	50.9	46.46
KRH50251	Soybean	nucleus	51.68	46.4
CDY28101	Canola	nucleus	51.16	46.15
CDY29341	Canola	nucleus	49.87	46.06
Solyc10g050860.1.1	Tomato	nucleus	50.9	46.03
Os03t0569900-01	Rice	nucleus	47.8	46.02
CDY50959	Canola	nucleus	50.9	45.81
Bra040663.1-P	Field mustard	nucleus	43.41	45.16
CDY68866	Canola	nucleus	48.32	45.06
Os07t0516900-01	Rice	plastid	29.2	45.02
CDX92304	Canola	nucleus	48.32	44.1
CDX99265	Canola	nucleus	48.32	44.1
AT3G19130.1	Thale cress	nucleus	49.35	43.91
Bra022389.1-P	Field mustard	nucleus	48.32	43.9
CDY22988	Canola	nucleus	47.55	43.81
Os04t0625800-01	Rice	nucleus	47.29	43.06
CDX82310	Canola	nucleus	45.74	42.96
Bra001735.1-P	Field mustard	nucleus	45.74	42.96
CDX95462	Canola	nucleus	48.06	42.86
Os08t0190200-00	Rice	nucleus	48.84	42.76
CDY18570	Canola	nucleus	47.8	42.63
Os03t0174100-02	Rice	nucleus	45.48	42.31
AT1G49600.3	Thale cress	nucleus	48.32	41.56
Bra037538.1-P	Field mustard	nucleus	41.34	39.7
Bra014216.1-P	Field mustard	nucleus	44.7	30.24
Os07t0615400-01	Rice	nucleus	27.39	24.82
Os11t0620100-01	Rice	nucleus	26.87	23.58
Os08t0520300-01	Rice	nucleus	27.13	23.49
Os10t0457000-01	Rice	nucleus	16.54	18.03
Os09t0115400-01	Rice	nucleus	23.51	13.75
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	22.48	13.18
Os04t0504800-01	Rice	plasma membrane	22.22	13.05
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	20.16	12.06
Os06t0589700-01	Rice	cytosol, extracellular	10.08	9.77
Os04t0682400-01	Rice	nucleus	21.19	8.13

Protein Annotations

MapMan:16.9.4	Gene3D:3.30.70.330	ProteinID:BAF14848.2	ProteinID:BAS89446.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os04g0449900
EnsemblPlants:Os04t0449900-01	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF4	UniProt:Q0JCT9
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF101447	SUPFAM:SSF54928	UniParc:UPI00001B0C1E
SEG:seg	:	:	:	:	:

Description

Similar to RNA Binding Protein 47. (Os04t0449900-01);Non-protein coding transcript. (Os04t0449900-02)

Coordinates

chr4:+:22414499..22419109

Molecular Weight (calculated)

41809.9 Da

IEP (calculated)

8.714

GRAVY (calculated)

-0.551

Length

387 amino acids

Sequence
(BLAST)

001: MAQARWVVLP YPPPPPPMVA APPPPPPQYA KHFAAGPPPA AAAGRRTPTP PAPAGSGGNG CEENKTIWVG DLQYWMDENY LHSCFGPSGE VVTIKVIRNR
101: QTGQSEGYGF VEFYSHGSAE KALQNFTGHV MPNTDRPFKL NWASYSMGEK RSEVASDYSI FVGDLAADVT DEMLMELFAN KYRSVKGAKV IIDANTGRSR
201: GYGFVRFGDD NDKSHAMTEM NGAYCSTRPI RIGPATPRRS SGDSGSSTPG HSDGDSTNRT VYVGGLDPNV SEDELRKAFA KYGDVASVKI PLGKQCGFVQ
301: FVSRTDAEEA LQGLNGSVIG KQAVRLSWGR SPSHKQSRAD SGSRRNNMYY GTPFYGGYGY ASPVPHPNMY AAAYGAYPVY GSQQLVS

Best Arabidopsis Sequence Match ( AT1G47500.1 )
(BLAST)

001: MADVKVQSES ESSDSHPLVD YQSLPPYPPP HPPVEVEENQ PKTSPTPPPP HWMRYPPVLM PQMMYAPPPP MPFSPYHQYP NHHHFHHQSR GNKHQNAFNG
101: ENKTIWVGDL QNWMDEAYLN SAFTSAEERE IVSLKVIRNK HNGSSEGYGF VEFESHDVAD KVLQEFNGAP MPNTDQPFRL NWASFSTGEK RLENNGPDLS
201: IFVGDLAPDV SDALLHETFS EKYPSVKAAK VVLDANTGRS KGYGFVRFGD ENERTKAMTE MNGVKCSSRA MRIGPATPRK TNGYQQQGGY MPSGAFTRSE
301: GDTINTTIFV GGLDSSVTDE DLKQPFSEFG EIVSVKIPVG KGCGFVQFVN RPNAEEALEK LNGTVIGKQT VRLSWGRNPA NKQPRDKYGN QWVDPYYGGQ
401: FYNGYGYMVP QPDPRMYPAA PYYPMYGGHQ QQVS

Arabidopsis Description

RBP47C'Polyadenylate-binding protein RBP47C' [Source:UniProtKB/Swiss-Prot;Acc:Q9SX80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.