Factsheet for Os08t0190200-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G295700.3	Wheat	plastid	58.6	83.28
TraesCS6A01G100800.1	Wheat	nucleus	75.11	80.98
TraesCS6D01G081700.2	Wheat	plastid	74.89	80.73
KXG24662	Sorghum	nucleus	81.9	79.39
TraesCS6B01G128900.2	Wheat	plastid	74.89	79.38
Os04t0625800-01	Rice	nucleus	75.79	78.82
Zm00001d049416_P001	Maize	extracellular, nucleus	81.0	78.51
TraesCS7B01G199000.1	Wheat	nucleus, plastid	74.21	77.91
Os03t0569900-01	Rice	nucleus	60.41	66.42
KRH51075	Soybean	endoplasmic reticulum	59.5	66.25
KRH02082	Soybean	nucleus	60.18	66.17
KRH20867	Soybean	nucleus	61.09	66.01
KRH11417	Soybean	nucleus	60.41	64.96
HORVU7Hr1G066510.3	Barley	plastid	62.9	63.62
Solyc03g031720.2.1	Tomato	nucleus	56.33	61.48
Solyc10g005260.2.1	Tomato	nucleus	57.01	61.31
PGSC0003DMT400029379	Potato	nucleus	55.43	61.25
PGSC0003DMT400013036	Potato	nucleus	54.98	60.75
AT1G11650.2	Thale cress	nucleus	55.66	60.74
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	56.56	60.53
PGSC0003DMT400042504	Potato	nucleus	56.11	60.05
CDY34835	Canola	nucleus	52.71	59.29
Bra031774.1-P	Field mustard	nucleus	52.04	58.38
Os02t0567900-01	Rice	cytosol, nucleus	31.9	54.44
Os07t0516900-01	Rice	plastid	30.54	53.78
Os03t0174100-02	Rice	nucleus	48.19	51.2
Os04t0449900-01	Rice	plastid	42.76	48.84
CDY34639	Canola	nucleus, plastid, vacuole	52.49	45.76
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	43.44	43.54
Os07t0615400-01	Rice	nucleus	24.66	25.53
Os08t0520300-01	Rice	nucleus	24.66	24.38
Os11t0620100-01	Rice	nucleus	22.17	22.22
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	23.76	15.91
Os10t0457000-01	Rice	nucleus	12.67	15.77
Os09t0115400-01	Rice	nucleus	23.08	15.41
Os04t0504800-01	Rice	plasma membrane	22.17	14.87
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.68	13.45
Os04t0682400-01	Rice	nucleus	19.91	8.73
Os06t0589700-01	Rice	cytosol, extracellular	7.47	8.27
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	2.04	7.2

Protein Annotations

EnsemblPlants:Os08t0190200-00	EnsemblPlantsGene:Os08g0190200	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR43955	PANTHER:PTHR43955:SF3	PFAM:PF00076	PFscan:PS50102	ProteinID:BAT04161.1	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000393A9F2	UniProt:A0A0P0XCP2	MapMan:16.9.4	:

Description

Similar to cDNA clone:J033051E20, full insert sequence. (Os08t0190200-00)

Coordinates

chr8:-:5268917..5273165

Molecular Weight (calculated)

47812.3 Da

IEP (calculated)

6.140

GRAVY (calculated)

-0.593

Length

442 amino acids

Sequence
(BLAST)

001: MMPQPQPGMA PPPPPPQAGV AGGGGAPPQW GAIPPPVPHQ QQQYAPPPPQ MWGQAPPPPP QMWGQAPPPP QPAYGQPPPA QAGYYGAPPQ AAPAVPAGPN
101: EVRTLWIGDL QYWMDENYIS ACFAPTGELQ SVKLIRDKQT GQLQGYGFIE FTSHAGAERV LQTYNGAMMP NVEQTYRLNW ASAGEKRDDT PDYTIFVGDL
201: AADVTDYILQ ETFRVHYPSV KGAKVVTDKM TMRSKGYGFV KFGDPSEQAR AMTEMNGMVC SSRPMRIGPA ANKKATGVQE KVPSAQGVQS DSDPSNTTIF
301: VGGLDPSVTD DMLKQVFTPY GDVVHVKIPV GKRCGFVQFA NRASADEALV LLQGTLIGGQ NVRLSWGRSP SNRQAQPQQD SNQWGGANAG YYGYGQGYEG
401: YGYAQPQDPN MYGYGAYAGY PNYQQPLAQQ PQQQQVRAVL FN

Best Arabidopsis Sequence Match ( AT1G11650.2 )
(BLAST)

001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY

Arabidopsis Description

RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.