Factsheet for Os07t0516900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009512_P001	Maize	mitochondrion	33.07	62.88
Zm00001d010739_P001	Maize	mitochondrion	29.88	60.48
Zm00001d018546_P001	Maize	endoplasmic reticulum, extracellular	33.47	59.15
Zm00001d016252_P001	Maize	nucleus	62.95	42.02
TraesCS2D01G227900.5	Wheat	nucleus	77.29	41.81
TraesCS2B01G247400.4	Wheat	nucleus	76.89	41.59
TraesCS2A01G221900.2	Wheat	nucleus	76.49	41.38
GSMUA_Achr6P29410_001	Banana	nucleus	47.01	35.98
GSMUA_Achr9P24980_001	Banana	cytosol	46.61	35.35
KXG36337	Sorghum	nucleus	66.93	35.22
Zm00001d021633_P006	Maize	nucleus	63.35	34.19
Os03t0569900-01	Rice	nucleus	54.58	34.08
Os04t0625800-01	Rice	nucleus	54.18	32.0
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	51.79	31.94
Zm00001d017181_P001	Maize	mitochondrion, nucleus, plastid	33.07	30.97
GSMUA_Achr10P...	Banana	nucleus	53.39	30.88
Zm00001d006496_P004	Maize	nucleus	66.14	30.57
Os08t0190200-00	Rice	nucleus	53.78	30.54
Os04t0449900-01	Rice	plastid	45.02	29.2
Os03t0174100-02	Rice	nucleus	47.01	28.37
Os02t0567900-01	Rice	cytosol, nucleus	27.09	26.25
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	45.82	26.08
HORVU2Hr1G046380.2	Barley	nucleus	40.64	23.13
Os08t0520300-01	Rice	nucleus	27.49	15.44
Os07t0615400-01	Rice	nucleus	25.9	15.22
Os11t0620100-01	Rice	nucleus	26.29	14.97
Os10t0457000-01	Rice	nucleus	20.32	14.37
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	22.31	8.66
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	20.32	7.73
Os04t0504800-01	Rice	plasma membrane	19.92	7.59
Os09t0115400-01	Rice	nucleus	19.12	7.25
Os04t0682400-01	Rice	nucleus	20.72	5.16
Os06t0589700-01	Rice	cytosol, extracellular	1.2	0.75

Protein Annotations

EnsemblPlants:Os07t0516900-01	EnsemblPlantsGene:Os07g0516900	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	PFAM:PF00076	PFscan:PS50102	ProteinID:BAT01770.1	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002249564	UniProt:A0A0N7KNJ2	MapMan:16.9.4	:

Description

Similar to RNA Binding Protein 45. (Os07t0516900-01);Similar to RNA Binding Protein 45. (Os07t0516900-02);Nucleotide-binding, alpha-beta plait domain containing protein. (Os07t0516900-03)

Coordinates

chr7:+:19920232..19922644

Molecular Weight (calculated)

27615.3 Da

IEP (calculated)

6.806

GRAVY (calculated)

-0.717

Length

251 amino acids

Sequence
(BLAST)

001: MQQPPPPPPQ YAPPPPQQFQ LPHQQYAPPP QHYAPPPPQQ QYGAQMAGGP APGGDEIRSL WIGDLQYWMD ESYLSNAFAP MGQQVTSVKV IRNKQSGHSE
101: GYGFIEFQSH AAAEYALANF NGRMMLNVDQ LFKLNWASSG AGERRAADDG PEHTIFVGDL ASDVTDSMLE EAFKTSYPSV RGAKVVFDKV TGRSKGYGFV
201: RFGDENEQTR AMTEMNGATL STRQMRLGPA ANKKNMGTQQ TYSTNGRHAT L

Best Arabidopsis Sequence Match ( AT1G11650.1 )
(BLAST)

001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEK

Arabidopsis Description

RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.