Factsheet for Bra015220.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71223	Canola	cytosol	95.5	86.52
CDY36634	Canola	nucleus	94.64	84.28
Bra013104.1-P	Field mustard	cytosol	81.66	76.62
Bra039841.1-P	Field mustard	cytosol	27.16	73.71
Bra034603.1-P	Field mustard	cytosol, plastid	77.68	72.54
Bra011488.1-P	Field mustard	cytosol, plastid	76.82	72.43
KRH50336	Soybean	cytosol	73.18	64.98
KRH70673	Soybean	nucleus	72.66	64.81
Bra018797.1-P	Field mustard	cytosol	71.28	63.09
PGSC0003DMT400066245	Potato	extracellular	69.9	62.83
Solyc01g107870.2.1	Tomato	extracellular	69.55	62.52
Os09t0115400-01	Rice	nucleus	64.36	56.19
TraesCS7D01G287900.1	Wheat	cytosol	61.76	55.96
KXG35258	Sorghum	cytosol	63.32	55.79
GSMUA_Achr4P09890_001	Banana	cytosol	62.8	55.67
Zm00001d019824_P004	Maize	cytosol	63.15	55.64
TraesCS5B01G159400.1	Wheat	cytosol	62.63	55.61
GSMUA_Achr9P00990_001	Banana	cytosol	62.63	55.61
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	58.65	55.48
TraesCS5D01G167000.1	Wheat	nucleus, unclear	62.46	55.45
TraesCS5A01G161800.2	Wheat	nucleus	62.46	55.45
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	62.98	55.15
GSMUA_AchrUn_...	Banana	cytosol	62.11	55.06
TraesCS7A01G288700.1	Wheat	nucleus	62.63	54.68
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	61.59	54.6
Zm00001d005276_P007	Maize	cytosol	61.76	54.59
Os04t0504800-01	Rice	plasma membrane	62.11	54.48
TraesCS2D01G358000.1	Wheat	cytosol	62.28	54.22
TraesCS2A01G359000.1	Wheat	cytosol	62.11	53.98
TraesCS2B01G378400.1	Wheat	nucleus	62.11	53.98
GSMUA_Achr4P20270_001	Banana	cytosol	60.03	53.97
EES12460	Sorghum	plastid	61.42	53.46
Zm00001d025801_P005	Maize	cytosol, plastid	60.21	53.37
Bra032172.1-P	Field mustard	cytosol	58.3	52.33
HORVU5Hr1G050560.1	Barley	plastid	62.63	51.57
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	55.71	51.44
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	62.11	50.14
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	67.99	49.94
TraesCS7B01G182800.3	Wheat	cytosol	57.61	49.33
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	49.13	43.83
Bra016371.1-P	Field mustard	plastid	43.6	42.35
GSMUA_Achr7P05430_001	Banana	nucleus	62.8	40.15
Bra003915.1-P	Field mustard	cytosol	44.81	39.97
Bra007984.1-P	Field mustard	plastid	43.08	39.9
Bra022413.1-P	Field mustard	cytosol	30.62	39.69
Bra016118.1-P	Field mustard	plastid	46.54	39.33
Bra034301.1-P	Field mustard	mitochondrion	7.27	37.84
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	23.7	26.25
Bra039603.1-P	Field mustard	nucleus	15.4	24.45
Bra037217.1-P	Field mustard	nucleus	16.09	24.41
Bra027446.1-P	Field mustard	cytosol	12.46	22.5
Bra002947.1-P	Field mustard	nucleus	14.71	21.46
Bra002230.1-P	Field mustard	nucleus	15.4	21.24
Bra031774.1-P	Field mustard	nucleus	14.01	20.56
Bra006502.1-P	Field mustard	nucleus	15.05	20.23
Bra019078.1-P	Field mustard	nucleus	14.19	19.9
Bra018813.1-P	Field mustard	mitochondrion, nucleus	13.32	19.74
Bra037962.1-P	Field mustard	nucleus	14.36	19.71
Bra010418.1-P	Field mustard	nucleus	12.8	19.58
Bra030908.1-P	Field mustard	nucleus	14.19	19.57
Bra030985.1-P	Field mustard	mitochondrion, nucleus	13.84	19.14
Bra001735.1-P	Field mustard	nucleus	13.32	18.69
Bra026387.1-P	Field mustard	nucleus	12.46	18.32
Bra022389.1-P	Field mustard	nucleus	13.49	18.31
Bra040663.1-P	Field mustard	nucleus	11.59	18.01
Bra037538.1-P	Field mustard	nucleus	12.28	17.62
Bra014216.1-P	Field mustard	nucleus	12.28	12.41

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra015220	EnsemblPlants:Bra015220.1	EnsemblPlants:Bra015220.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR002004
InterPro:IPR012677	UniProt:M4DFE7	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_HYD	PFAM:PF00076
PFAM:PF00658	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928
SUPFAM:SSF63570	UniParc:UPI000254464D	SEG:seg	:	:	:

Description

AT4G34110 (E=3e-153) PAB2, PABP2, ATPAB2 | PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor

Coordinates

chrA10:-:3310851..3314350

Molecular Weight (calculated)

63764.8 Da

IEP (calculated)

7.008

GRAVY (calculated)

-0.513

Length

578 amino acids

Sequence
(BLAST)

001: MAQVQPQGQN PNGSGTAGGT TSLYVGDLHA NVTDAQLFEA FSQMGQVVTV RVCRDLATWR SLGYGYVNFA TPQDAARAIQ EMNYIPLNGK PVRVMYSHRD
101: PSVRRSGAGN IFIKNLDKSI DHKALHDTFS AFGNIISCKV AVDSSGQSKG YGFMQYETDE SAQKPMAQLN GMLLNDKQVY VGPFLRRQER DSTANVTKFT
201: NVYVKNLAES TTDDDLKNTF GEFGNIISAL VMKDRDVKSK GFGYVNFDNA DDAARAVETL NGKTFDDKEW FVGRAQKKSE RKTELKVRYE QSLREAADKF
301: QSSNLYVTNL DDSISDEKLK ELFTPYGTVT SWKAQFSQMR PGAMPPSVGP RMQMYPPGGP GIGQQVFYGQ APPPMIPSQS VFGYQQQMVP EMRPGGGPMH
401: NFFMPMVQHG QQRPGGRRPG GIQQSHHHQQ QQVPMMQQHP RGRMFRYSQC RGSGGPPDVL GMLPYEMPSN MPLRDPVLSQ HVPIGALATS LANASPEHQR
501: TMLGENLYQL VEQLEAESAA KVTGMLLEMD QTEVLHLLES PEALKAKVAE AMDVLRSVAA GGAAEQLASL NLNDDLVS

Best Arabidopsis Sequence Match ( AT1G22760.1 )
(BLAST)

001: MAAAVATGVA PATMVDQVPS PTAQTSVQVP VSIPLPSPVV VADQTHPNSS LYAGDLDPKV TEAHLFDLFK HVANVVSVRV CRDQNRRSLG YAYINFSNPN
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD

Arabidopsis Description

PAB3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64380]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.