CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97304
KRH69036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	KRG97304	AT2G43970.1	21798944
AT4G34110.1	KRH69036	AT2G43970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70673	Soybean	nucleus	97.08	97.53
PGSC0003DMT400066245	Potato	extracellular	78.96	79.94
KRH15385	Soybean	nucleus	79.88	79.75
Solyc01g107870.2.1	Tomato	extracellular	78.65	79.63
KRH05656	Soybean	endoplasmic reticulum, nucleus	79.11	78.75
CDX89664	Canola	cytosol	71.28	75.57
CDX71223	Canola	cytosol	73.89	75.39
GSMUA_Achr9P00990_001	Banana	cytosol	74.96	74.96
CDY62723	Canola	cytosol	70.97	74.88
Bra034603.1-P	Field mustard	cytosol, plastid	71.12	74.8
CDY67364	Canola	nucleus	33.64	74.74
CDY51957	Canola	cytosol, plastid	70.97	74.64
CDY54068	Canola	cytosol	74.81	74.58
AT4G34110.1	Thale cress	cytosol	72.04	74.56
GSMUA_Achr4P09890_001	Banana	cytosol	74.65	74.54
CDX69025	Canola	nucleus, plastid	69.89	74.47
CDX75397	Canola	nucleus, plastid	70.35	74.35
Bra011488.1-P	Field mustard	cytosol, plastid	69.89	74.23
Bra013104.1-P	Field mustard	cytosol	70.2	74.19
Bra018797.1-P	Field mustard	cytosol	74.35	74.12
CDY51045	Canola	cytosol	74.35	74.12
CDY36634	Canola	nucleus	72.96	73.19
Bra015220.1-P	Field mustard	cytosol	64.98	73.18
GSMUA_AchrUn_...	Banana	cytosol	72.66	72.55
KRH52023	Soybean	cytosol, endoplasmic reticulum	70.2	72.54
AT1G49760.1	Thale cress	cytosol	74.5	72.28
KRH61326	Soybean	cytosol, endoplasmic reticulum	69.59	71.9
GSMUA_Achr4P20270_001	Banana	cytosol	70.35	71.23
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	66.82	71.19
CDY67365	Canola	plastid	31.49	70.21
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	70.97	70.0
Os09t0115400-01	Rice	nucleus	71.12	69.94
Os04t0504800-01	Rice	plasma membrane	70.51	69.65
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	69.59	69.48
Zm00001d025801_P005	Maize	cytosol, plastid	68.97	68.86
CDX79296	Canola	plastid	19.35	68.85
TraesCS2A01G359000.1	Wheat	cytosol	70.2	68.72
TraesCS2D01G358000.1	Wheat	cytosol	70.05	68.67
TraesCS5B01G159400.1	Wheat	cytosol	68.66	68.66
TraesCS7D01G287900.1	Wheat	cytosol	67.28	68.65
TraesCS2B01G378400.1	Wheat	nucleus	70.05	68.57
TraesCS5D01G167000.1	Wheat	nucleus, unclear	68.51	68.51
TraesCS5A01G161800.2	Wheat	nucleus	68.51	68.51
EES12460	Sorghum	plastid	69.74	68.37
KXG35258	Sorghum	cytosol	68.51	67.99
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	81.87	67.73
Zm00001d005276_P007	Maize	cytosol	67.74	67.43
TraesCS7A01G288700.1	Wheat	nucleus	68.36	67.22
Zm00001d019824_P004	Maize	cytosol	67.43	66.92
HORVU5Hr1G050560.1	Barley	plastid	68.82	63.82
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	68.2	62.01
TraesCS7B01G182800.3	Wheat	cytosol	63.44	61.19
KRG91724	Soybean	cytosol	59.91	59.82
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	57.3	57.56
KRH08608	Soybean	endoplasmic reticulum	56.68	55.41
KRH70233	Soybean	cytosol	53.0	54.85
GSMUA_Achr7P05430_001	Banana	nucleus	72.04	51.88
Bra022413.1-P	Field mustard	cytosol	33.79	49.33
CDX92325	Canola	nucleus	23.2	46.89
KRH32613	Soybean	cytosol	33.79	44.99
KRH67800	Soybean	cytosol	43.47	44.78
KRG96088	Soybean	cytosol	43.16	44.18
KRH19986	Soybean	cytosol	32.87	43.23
KRH36396	Soybean	endoplasmic reticulum	16.59	29.59
KRH27525	Soybean	nucleus	16.44	29.4
KRH10201	Soybean	mitochondrion, nucleus, plastid	12.6	27.89
KRH29709	Soybean	cytosol	16.44	26.68
KRH23136	Soybean	cytosol	16.9	26.25
KRH24702	Soybean	nucleus	16.13	26.18
KRH20867	Soybean	nucleus	15.21	24.21
KRH51075	Soybean	endoplasmic reticulum	14.75	24.18
KRH11417	Soybean	nucleus	15.21	24.09
KRH02581	Soybean	mitochondrion	15.05	23.73
KRH02082	Soybean	nucleus	14.59	23.63
KRH06218	Soybean	nucleus	15.05	23.56
KRH52613	Soybean	nucleus	15.67	23.45
KRH19347	Soybean	mitochondrion, nucleus	14.75	23.41
KRH61952	Soybean	mitochondrion	15.21	23.29
KRH61258	Soybean	nucleus	14.59	23.23
KRH47641	Soybean	nucleus	15.05	23.22
KRH05723	Soybean	nucleus	14.44	22.76
KRH71168	Soybean	nucleus	15.05	22.74
KRH51956	Soybean	nucleus	14.29	22.63
KRH50251	Soybean	nucleus	14.44	21.81
KRH15315	Soybean	nucleus	14.13	21.65

Protein Annotations

Gene3D:1.10.1900.10	EntrezGene:100780329	MapMan:17.4.2.5	Gene3D:3.30.70.330	EMBL:ACUP02004680	ncoils:Coil
EnsemblPlantsGene:GLYMA_07G215300	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	UniProt:I1KM25	InterPro:IPR000504	InterPro:IPR002004
InterPro:IPR012677	EnsemblPlants:KRH50336	ProteinID:KRH50336	ProteinID:KRH50336.1	ProteinID:KRH50337.1	InterPro:Nucleotide-bd_a/b_plait_sf
InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102
PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk
SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628
UniParc:UPI0002338386	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:38752070..38757974

Molecular Weight (calculated)

70915.5 Da

IEP (calculated)

7.915

GRAVY (calculated)

-0.461

Length

651 amino acids

Sequence
(BLAST)

001: MAQVQVPPQN AMPGPNGGGG AGGAGNQFVT TSLYVGDLDP NVTDAQLYDL FNQLGQVVSV RVCRDLTSRR SLGYGYVNFS NPQDAARALD VLNFTPLNNR
101: PIRIMYSHRD PSIRKSGQGN IFIKNLDRAI DHKALHDTFS TFGNILSCKV ATDSSGQSKG YGFVQFDNEE SAQKAIEKLN GMLLNDKQVY VGPFLRKQER
201: ESAADKAKFN NVFVKNLSES TTDDELKNTF GEFGTITSAV VMRDGDGKSK CFGFVNFENA DDAARAVEAL NGKNFDDKEW YVGKAQKKSE RENELKQRFE
301: QSMKEAADKY QGANLYVKNL DDSIGDEKLK ELFSPFGTIT SCKVMRDPNG LSRGSGFVAF STPEEASRAL LEMNGKMVVS KPLYVTLAQR KEDRRARLQA
401: QFAQMRPVGM PPSVGPRVPM YPPGGPGIGQ QLFYSQGPPA IIPSQPGFGY QQQLMPGMRP GAAPVPNFFV PMVQQGQQGQ RPGGRRPGAV QQSQQPVPMM
501: PQQMLPRGRV YRYPPGRGIP DVPIPGVAGG MFSVPYDVGG MPLRDASISQ QIPVGALATA LANASPEQQR TMLGENLYPL VEQLEPDNAA KVTGMLLEMD
601: QTEVLHLLES PEALKAKVAE AMDVLRNVAQ QQAGGTADQL ASLSLNDNLV S

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.