Factsheet for Solyc01g107870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g015650.2.1
Solyc12g019000.1.1
Solyc12g096640.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	Solyc08g015650.2.1	AT2G43970.1	21798944
AT4G34110.1	Solyc12g019000.1.1	AT2G43970.1	21798944
AT4G34110.1	Solyc12g096640.1.1	AT2G43970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066245	Potato	extracellular	98.13	98.13
KRH70673	Soybean	nucleus	79.63	79.01
KRH50336	Soybean	cytosol	79.63	78.65
Solyc12g088720.1.1	Tomato	plastid	76.83	74.17
CDY67364	Canola	nucleus	33.75	74.06
CDY62723	Canola	cytosol	69.83	72.77
CDY51957	Canola	cytosol, plastid	69.98	72.7
CDY54068	Canola	cytosol	73.72	72.59
Bra034603.1-P	Field mustard	cytosol, plastid	69.83	72.54
Bra018797.1-P	Field mustard	cytosol	73.56	72.43
CDY51045	Canola	cytosol	73.56	72.43
CDX89664	Canola	cytosol	69.05	72.31
Bra013104.1-P	Field mustard	cytosol	69.05	72.08
CDX71223	Canola	cytosol	71.23	71.79
AT4G34110.1	Thale cress	cytosol	70.14	71.7
CDX75397	Canola	nucleus, plastid	68.27	71.27
CDX69025	Canola	nucleus, plastid	67.34	70.87
Bra011488.1-P	Field mustard	cytosol, plastid	67.5	70.8
AT1G49760.1	Thale cress	cytosol	73.09	70.04
Bra015220.1-P	Field mustard	cytosol	62.52	69.55
CDY36634	Canola	nucleus	69.52	68.88
CDX79296	Canola	plastid	19.13	67.21
CDY67365	Canola	plastid	30.48	67.12
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	79.16	64.68
Bra022413.1-P	Field mustard	cytosol	33.13	47.76
CDX92325	Canola	nucleus	23.02	45.96
Solyc10g085750.1.1	Tomato	nucleus	42.3	43.73
Solyc09g008620.1.1	Tomato	cytosol	39.66	42.15
Solyc03g118800.2.1	Tomato	nucleus	17.57	31.04
Solyc11g065880.1.1	Tomato	nucleus	16.33	25.18
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	15.71	24.46
Solyc07g042180.2.1	Tomato	nucleus	15.09	24.37
Solyc10g005260.2.1	Tomato	nucleus	15.55	24.33
Solyc06g063000.2.1	Tomato	nucleus	15.71	24.22
Solyc03g031720.2.1	Tomato	nucleus	15.24	24.2
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	14.77	23.69
Solyc07g064510.2.1	Tomato	plastid	14.93	23.41
Solyc10g050860.1.1	Tomato	nucleus	15.4	23.13
Solyc03g122180.2.1	Tomato	nucleus	14.93	23.02
Solyc04g079310.2.1	Tomato	nucleus	15.86	22.62
Solyc01g108500.2.1	Tomato	nucleus	14.0	21.79
Solyc06g062680.1.1	Tomato	cytosol	16.64	20.15

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	UniProt:K4B303	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom
InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102	PFscan:PS51309
PANTHER:PTHR24012	PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360
SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	EnsemblPlantsGene:Solyc01g107870.2	EnsemblPlants:Solyc01g107870.2.1
TIGRFAMs:TIGR01628	UniParc:UPI0002768048	SEG:seg	:	:	:

Description

Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:K4B303]

Coordinates

chr1:+:95260638..95267406

Molecular Weight (calculated)

70181.9 Da

IEP (calculated)

7.998

GRAVY (calculated)

-0.405

Length

643 amino acids

Sequence
(BLAST)

001: MAQVQVQPQG ANASGVNQFV TSLYVGDLDV NVTDSQLYDL FNQLGQVVSV RVCRDLTTQR SLGYGYVNYG NPQDAARALE VLNFTPLSGK PIRIMYSNRD
101: PTVRRSGTAN IFIKNLDKAI DHKALHDTFS AFGNILSCKV AVDSSGQSKG YGFVQYDSED AAQKAIEKLN GMLLNDKQVY VGPFVRKQER DMAVDKTRFT
201: NVFVKNLSEA TSEEDLKKAF DEFGAITSIA IMKDEDGKSR SFGFVNFENA EDAARAVEAL NGHKFDNKEW FVGRAQKKSE REMELKNRYE QSAKEAVDKS
301: QGLNLYIKNL DDSISDDKLK DMFSTYGTIT SCKVMRDPSG VSKGSGFVAF SSPEEASRAL AEMNGKMIVS KPLYVALAQR KEERRARLQA QFSQMRPIGM
401: ASTVAPRMPM YPPGGPGLGQ QIFYGQPQPA MLPPQAGFGY QQQLVPGMRP GGGPMPNFFM PMVQQGQQGQ RPGGRRGGAV PLQQGQQPVP LMQQQMFPRG
501: RGYRYPPGRG IPDVGFPGVG GGMFSVPYDM GGMPVRAAGI AQPIPVGALA TALANASPTE QRTMLGENLY PLVEQLEPET AAKVTGMLLE MDQTEVLHLL
601: ESPEALKAKV AEAMDVLRNV PQQQASNAAD QLASLSLNDG LVS

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.