Factsheet for Solyc07g064510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008230.2.1
Solyc04g009180.1.1
Solyc06g066340.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27000.1	Solyc01g008230.2.1	AT5G08330.1	21798944
AT4G27000.1	Solyc04g009180.1.1	AT5G08330.1	21798944
AT4G27000.1	Solyc06g066340.2.1	AT5G16560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057203	Potato	cytosol	93.9	95.53
AT4G27000.1	Thale cress	nucleus	65.61	64.82
CDX89287	Canola	nucleus	65.12	64.49
Solyc10g005260.2.1	Tomato	nucleus	64.63	64.48
Bra019078.1-P	Field mustard	nucleus	64.63	64.32
Solyc03g031720.2.1	Tomato	nucleus	62.68	63.46
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	63.66	63.2
CDY14290	Canola	nucleus	63.9	62.83
CDY29263	Canola	nucleus	64.15	62.77
Bra010418.1-P	Field mustard	nucleus	57.8	62.7
VIT_19s0090g00280.t01	Wine grape	nucleus	70.73	62.63
CDY46671	Canola	nucleus	64.63	61.77
CDX92786	Canola	mitochondrion, nucleus, peroxisome	64.15	61.74
CDY66423	Canola	nucleus	63.66	61.27
Bra002947.1-P	Field mustard	nucleus	58.78	60.86
Bra026387.1-P	Field mustard	nucleus	57.8	60.31
CDY17286	Canola	nucleus	59.02	59.75
AT5G54900.1	Thale cress	nucleus	55.61	58.91
CDY19874	Canola	nucleus	59.02	57.76
Solyc01g108500.2.1	Tomato	nucleus	50.49	50.12
Solyc10g050860.1.1	Tomato	nucleus	50.0	47.9
Solyc11g065880.1.1	Tomato	nucleus	48.29	47.48
Solyc04g079310.2.1	Tomato	nucleus	50.0	45.45
Zm00001d021149_P001	Maize	cytosol	18.05	44.85
Solyc07g042180.2.1	Tomato	nucleus	26.1	26.88
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	26.1	26.68
Solyc06g063000.2.1	Tomato	nucleus	26.34	25.9
Solyc03g122180.2.1	Tomato	nucleus	25.12	24.7
Solyc03g118800.2.1	Tomato	nucleus	13.9	15.66
Solyc01g107870.2.1	Tomato	extracellular	23.41	14.93
Solyc12g088720.1.1	Tomato	plastid	23.9	14.71
Solyc09g008620.1.1	Tomato	cytosol	19.76	13.39
Solyc10g085750.1.1	Tomato	nucleus	20.24	13.34
Solyc06g062680.1.1	Tomato	cytosol	10.73	8.29

Protein Annotations

EnsemblPlants:Solyc07g064510.2.1	EnsemblPlantsGene:Solyc07g064510.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000276C617	UniProt:K4CHD1	MapMan:16.9.4	:	:

Description

No Description!

Coordinates

chr7:-:66621523..66625400

Molecular Weight (calculated)

45179.5 Da

IEP (calculated)

5.752

GRAVY (calculated)

-0.707

Length

410 amino acids

Sequence
(BLAST)

001: MMPQSGVAQP AMAPMSMDQY QQQAPPTQQQ QQWMMQPPQA QQPQFQPSWG QQQQQPSQTM SQQYVATNSS PSSNVNPNEV RSLWIGDLQY WMDESYLSTC
101: FYHTGELVSA KVIRNKQSGQ SEGYGFLEFR SHAAAETVLQ TYNGALMPNV EQNFRMNWAS LGAGERRDDS PEYTIFVGDL AADVTDYVLQ ETFKPVYSSV
201: KGAKVVTDRI TGRTKGYGFV KFSDESEQLR AMTEMNGVLC SSRPMRIGPA ANKKPMGTPQ KATYQNPQAT QGESDPNNTT IFVGGLDPSV AEEHLRQVFS
301: PYGELVHVKI VAGKRCGFVQ FGSRASAEQA LSSLNGTQLG GQSIRLSWGR SPSNKQSDQA QWGGSAGAGA GAYYGYAQGY EAYGYAPPAQ DPNMYYGNYP
401: GYGNYQQPQQ

Best Arabidopsis Sequence Match ( AT4G27000.1 )
(BLAST)

001: MMQQPPPASN GAATGPGQIP SDQQAYLQQQ QSWMMQHQQQ QQGQPPAGWN QQSAPSSGQP QQQQYGGGGS QNPGSAGEIR SLWIGDLQPW MDENYLMNVF
101: GLTGEATAAK VIRNKQNGYS EGYGFIEFVN HATAERNLQT YNGAPMPSSE QAFRLNWAQL GAGERRQAEG PEHTVFVGDL APDVTDHMLT ETFKAVYSSV
201: KGAKVVNDRT TGRSKGYGFV RFADESEQIR AMTEMNGQYC SSRPMRTGPA ANKKPLTMQP ASYQNTQGNS GESDPTNTTI FVGAVDQSVT EDDLKSVFGQ
301: FGELVHVKIP AGKRCGFVQY ANRACAEQAL SVLNGTQLGG QSIRLSWGRS PSNKQTQPDQ AQYGGGGGYY GYPPQGYEAY GYAPPPQDPN AYYGGYAGGG
401: YGNYQQPGGY QQQQQ

Arabidopsis Description

RBP45CPolyadenylate-binding protein RBP45C [Source:UniProtKB/Swiss-Prot;Acc:Q93W34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.