Factsheet for Bra010418.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra008613.1-P
Bra023570.1-P
Bra028662.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27000.1	Bra028662.1-P	AT5G08330.1	21798944
AT4G27000.1	Bra008613.1-P	AT5G16560.1	21798944
AT4G27000.1	Bra023570.1-P	AT5G16560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14290	Canola	nucleus	96.56	87.53
CDY66423	Canola	nucleus	94.97	84.27
Bra019078.1-P	Field mustard	nucleus	84.13	77.18
Bra026387.1-P	Field mustard	nucleus	80.16	77.1
AT4G27000.1	Thale cress	nucleus	83.33	75.9
Bra002947.1-P	Field mustard	nucleus	67.46	64.39
Solyc07g064510.2.1	Tomato	plastid	62.7	57.8
PGSC0003DMT400057203	Potato	cytosol	61.38	57.57
VIT_19s0090g00280.t01	Wine grape	nucleus	63.23	51.62
Bra031774.1-P	Field mustard	nucleus	53.7	51.52
Bra027446.1-P	Field mustard	cytosol	38.62	45.62
Zm00001d021149_P001	Maize	cytosol	19.05	43.64
Bra040663.1-P	Field mustard	nucleus	42.59	43.28
Bra018813.1-P	Field mustard	mitochondrion, nucleus	42.59	41.28
Bra002230.1-P	Field mustard	nucleus	44.18	39.86
Bra037538.1-P	Field mustard	nucleus	42.33	39.7
Bra001735.1-P	Field mustard	nucleus	43.12	39.56
Bra006502.1-P	Field mustard	nucleus	44.97	39.53
Bra022389.1-P	Field mustard	nucleus	44.44	39.44
Bra014216.1-P	Field mustard	nucleus	42.59	28.15
Bra030985.1-P	Field mustard	mitochondrion, nucleus	25.13	22.73
Bra030908.1-P	Field mustard	nucleus	25.13	22.67
Bra037962.1-P	Field mustard	nucleus	25.13	22.57
Bra034301.1-P	Field mustard	mitochondrion	5.82	19.82
Bra039603.1-P	Field mustard	nucleus	15.87	16.48
Bra037217.1-P	Field mustard	nucleus	16.14	16.01
Bra032172.1-P	Field mustard	cytosol	24.34	14.29
Bra013104.1-P	Field mustard	cytosol	23.02	14.12
Bra011488.1-P	Field mustard	cytosol, plastid	22.75	14.03
Bra016371.1-P	Field mustard	plastid	21.96	13.95
Bra034603.1-P	Field mustard	cytosol, plastid	22.75	13.89
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	22.49	13.58
Bra018797.1-P	Field mustard	cytosol	22.49	13.02
Bra015220.1-P	Field mustard	cytosol	19.58	12.8
Bra007984.1-P	Field mustard	plastid	20.11	12.18
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	16.67	12.07
Bra003915.1-P	Field mustard	cytosol	20.63	12.04
Bra016118.1-P	Field mustard	plastid	21.43	11.84
Bra039841.1-P	Field mustard	cytosol	5.56	9.86
Bra022413.1-P	Field mustard	cytosol	9.79	8.3

Protein Annotations

EnsemblPlants:Bra010418.1	EnsemblPlants:Bra010418.1-P	EnsemblPlantsGene:Bra010418	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002545851	UniProt:M4D1R8	MapMan:16.9.4	:

Description

AT4G27000 (E=3e-106) ATRBP45C | ATRBP45C; RNA binding

Coordinates

chrA08:+:14430150..14432710

Molecular Weight (calculated)

41015.3 Da

IEP (calculated)

5.355

GRAVY (calculated)

-0.778

Length

378 amino acids

Sequence
(BLAST)

001: MMQQPPPAAN GAAAAGPGDQ QAYHHHQQSW MMQPHQAQPP AGWNPQSAPS LGQPQQYSGG SQTPGSGDEI RSLWIGDLQP WMDESYLVNS FSITGEVQQA
101: KVIRNKQSGY SEGYGFIEFV SHAAAERILQ TYNGALMPSS EQTFKLNWAG ERRQSEGPEH TVFVGDLAPD VTDYMLTETF KNVYSSVKGA KVVVDRTTGR
201: SKGYGFVRFG DESEQIRAMT EMNGQYCSSR PMRTGPAANK KPLTMQQPGG YQNPQGNAGE SDLTNTTVST LFCFGFVKAC AEQGLNALNG TQLGGQSIRL
301: SWGRTTSNKQ TQPDQAQYGG GGGYYGYPPQ GYEGYGYAPP PQDPNAYYGG YPGAGYGNYQ QPGGGYQQQQ QVLLPEDL

Best Arabidopsis Sequence Match ( AT4G27000.1 )
(BLAST)

001: MMQQPPPASN GAATGPGQIP SDQQAYLQQQ QSWMMQHQQQ QQGQPPAGWN QQSAPSSGQP QQQQYGGGGS QNPGSAGEIR SLWIGDLQPW MDENYLMNVF
101: GLTGEATAAK VIRNKQNGYS EGYGFIEFVN HATAERNLQT YNGAPMPSSE QAFRLNWAQL GAGERRQAEG PEHTVFVGDL APDVTDHMLT ETFKAVYSSV
201: KGAKVVNDRT TGRSKGYGFV RFADESEQIR AMTEMNGQYC SSRPMRTGPA ANKKPLTMQP ASYQNTQGNS GESDPTNTTI FVGAVDQSVT EDDLKSVFGQ
301: FGELVHVKIP AGKRCGFVQY ANRACAEQAL SVLNGTQLGG QSIRLSWGRS PSNKQTQPDQ AQYGGGGGYY GYPPQGYEAY GYAPPPQDPN AYYGGYAGGG
401: YGNYQQPGGY QQQQQ

Arabidopsis Description

RBP45CPolyadenylate-binding protein RBP45C [Source:UniProtKB/Swiss-Prot;Acc:Q93W34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.