Factsheet for Bra023570.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003340.1-P
Bra006236.1-P
Bra007398.1-P
Bra008782.1-P
Bra009783.1-P
Bra010714.1-P
Bra012987.1-P
Bra014569.1-P
Bra015573.1-P
Bra017007.1-P
Bra019468.1-P
Bra020466.1-P
Bra022254.1-P
Bra023448.1-P
Bra025910.1-P
Bra026347.1-P
Bra026382.1-P
Bra031570.1-P
Bra033597.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16560.1	Bra015573.1-P	AT1G07310.1	21798944
AT5G16560.1	Bra031570.1-P	AT1G07310.1	21798944
AT5G16560.1	Bra025910.1-P	AT1G18400.1	21798944
AT5G16560.1	Bra017007.1-P	AT2G19650.1	21798944
AT5G16560.1	Bra022254.1-P	AT3G17860.1	21798944
AT5G16560.1	Bra019468.1-P	AT3G44720.1	21798944
AT5G16560.1	Bra003340.1-P	AT3G58500.1	21798944
AT5G16560.1	Bra007398.1-P	AT3G58500.1	21798944
AT5G16560.1	Bra014569.1-P	AT3G58500.1	21798944
AT5G16560.1	Bra026382.1-P	AT4G27060.1	21798944
AT5G16560.1	Bra026347.1-P	AT4G27460.1	21798944
AT5G16560.1	Bra010714.1-P	AT4G39050.1	21798944
AT5G16560.1	Bra033597.1-P	AT4G39050.1	21798944
AT5G16560.1	Bra006236.1-P	AT5G14070.1	21798944
AT5G16560.1	Bra008782.1-P	AT5G14070.1	21798944
AT5G16560.1	Bra023448.1-P	AT5G14070.1	21798944
AT5G16560.1	Bra009783.1-P	AT5G24660.1	21798944
AT5G16560.1	Bra020466.1-P	AT5G24660.1	21798944
AT5G16560.1	Bra012987.1-P	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008613.1-P	Field mustard	nucleus	60.3	82.47
CDX85500	Canola	nucleus	75.88	75.69
AT5G16560.1	Thale cress	nucleus	64.82	64.02
Bra018498.1-P	Field mustard	mitochondrion	9.55	53.52
Bra021038.1-P	Field mustard	plastid	18.34	40.78
Solyc06g066340.2.1	Tomato	nucleus	26.63	36.43
VIT_04s0043g00340.t01	Wine grape	nucleus	39.95	34.05
Bra023254.1-P	Field mustard	nucleus	30.15	32.79
PGSC0003DMT400043200	Potato	nucleus	31.16	31.16
Bra033844.1-P	Field mustard	nucleus	30.65	31.12
Bra006360.1-P	Field mustard	nucleus	56.53	30.7
GSMUA_Achr4P04510_001	Banana	nucleus	28.89	30.67
Bra040176.1-P	Field mustard	nucleus	24.37	30.6
KRH39002	Soybean	nucleus	29.15	28.16
Os08t0426866-00	Rice	nucleus	32.91	27.99
KRH48713	Soybean	nucleus	29.15	27.88
KXG25180	Sorghum	nucleus	32.41	27.16
Zm00001d032249_P002	Maize	plastid	30.65	25.31
Bra026202.1-P	Field mustard	nucleus	12.06	24.0
Bra029503.1-P	Field mustard	mitochondrion	10.05	23.26
Bra026818.1-P	Field mustard	nucleus	12.06	20.0
Bra026618.1-P	Field mustard	nucleus	12.56	19.08
Bra024836.1-P	Field mustard	nucleus	11.56	17.76
Bra005124.1-P	Field mustard	nucleus	12.56	14.84
Bra035311.1-P	Field mustard	nucleus	22.61	14.42
Bra000180.1-P	Field mustard	nucleus	13.07	13.37
Bra004973.1-P	Field mustard	nucleus	13.32	13.02
Bra017425.1-P	Field mustard	nucleus	5.03	10.1
Bra000270.1-P	Field mustard	nucleus	6.03	8.33
Bra017021.1-P	Field mustard	nucleus	3.77	4.12

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	MapMan:27.4.5.2	EnsemblPlantsGene:Bra023570	EnsemblPlants:Bra023570.1	EnsemblPlants:Bra023570.1-P
InterPro:CRIB_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR000095
UniProt:M4E467	InterPro:Myb_dom_plants	PFAM:PF00249	PFAM:PF00786	PFscan:PS50108	PANTHER:PTHR31496
PANTHER:PTHR31496:SF3	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0002543049	SEG:seg

Description

AT5G16560 (E=3e-101) KAN, KAN1 | KAN (KANADI); transcription factor

Coordinates

chrA02:-:3964619..3975652

Molecular Weight (calculated)

44513.2 Da

IEP (calculated)

9.481

GRAVY (calculated)

-0.719

Length

398 amino acids

Sequence
(BLAST)

001: MSMEGVFLEK PKSNTTTTLP DLSLNISLPD THHHLRHNEL SRRSSQTDNN RSSNLELSLS HHNNPSSSPS SRILHCPDPR NLNLSHHQHY NNSILNGRSL
101: HQRVDESDIN NIHRPIRGIP VYHNRSFPFH QQTSHSSSLG GGDLDSSSIL NSSSGYNNAY RSLQSSPRLK GVPVHHHNHY GVVGSSDSSS PHHHHHHHGM
201: IRSRFLPKMP TKRSMRAPRM RWTSSLHARF VHAVELLGGH ERATPKSVLE LMDVKDLTLA HVKSHLQMYR TVKTTNKPAA SSGIHDQEEE ENMKNVFKFL
301: AVSKPDISTG INRLFKSFKT ISQHFAYKEE EEESEDGGME IGVPTNVKHV SHIGWESGLT AVAGPGKGWE DFIPPELLAA AAAATKQDVV NPLLHHTL

Best Arabidopsis Sequence Match ( AT5G16560.1 )
(BLAST)

001: MSMEGVFLEK TKTNTTTTLP DLSLHISLPD IHQYHHNESS KESSRRSSQL ENNNRSSNFE LSLSHHNHPT ARIFHCPDRR TLNLPHQQHY NNPIINGVHQ
101: RVDESEISNL HRPIRGIPVY HNRSFPFHQQ NSSLPSLGGG DMDQISILNS SSGYNNAYRS LQSSPRLKGV PLHHHHHHNQ YGVVGSSDSS SPHHHNHHHH
201: GMIRSRFLPK MPTKRSMRAP RMRWTSSLHA RFVHAVELLG GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTVKTTNKP AASSDGSGEE EMGINGNEVH
301: HQSSTDQRAQ SDDTSLHQET DISSTQPRWS NSSRETWPLS NNCSSDIDTM IRTSSTSMIS HYQRSSIQNQ EQRSNDQAKR CGNLSCENPS LEFTLGRPDW
401: HEK

Arabidopsis Description

KAN1Transcription repressor KAN1 [Source:UniProtKB/Swiss-Prot;Acc:Q93WJ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.