Factsheet for PGSC0003DMT400043200

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400006076
PGSC0003DMT400008772
PGSC0003DMT400013427
PGSC0003DMT400013430
PGSC0003DMT400013435
PGSC0003DMT400013766
PGSC0003DMT400014656
PGSC0003DMT400015573
PGSC0003DMT400018339
PGSC0003DMT400036790
PGSC0003DMT400037390
PGSC0003DMT400063083
PGSC0003DMT400064370
PGSC0003DMT400068261
PGSC0003DMT400069515
PGSC0003DMT400074101

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16560.1	PGSC0003DMT400015573	AT1G07310.1	21798944
AT5G16560.1	PGSC0003DMT400013766	AT1G18400.1	21798944
AT5G16560.1	PGSC0003DMT400014656	AT1G18400.1	21798944
AT5G16560.1	PGSC0003DMT400036790	AT3G17860.1	21798944
AT5G16560.1	PGSC0003DMT400074101	AT3G17860.1	21798944
AT5G16560.1	PGSC0003DMT400018339	AT3G44720.1	21798944
AT5G16560.1	PGSC0003DMT400068261	AT3G44720.1	21798944
AT5G16560.1	PGSC0003DMT400037390	AT4G27060.1	21798944
AT5G16560.1	PGSC0003DMT400064370	AT4G27460.1	21798944
AT5G16560.1	PGSC0003DMT400008772	AT4G39050.1	21798944
AT5G16560.1	PGSC0003DMT400006076	AT5G14070.1	21798944
AT5G16560.1	PGSC0003DMT400013427	AT5G14070.1	21798944
AT5G16560.1	PGSC0003DMT400013430	AT5G14070.1	21798944
AT5G16560.1	PGSC0003DMT400013435	AT5G14070.1	21798944
AT5G16560.1	PGSC0003DMT400001474	AT5G24660.1	21798944
AT5G16560.1	PGSC0003DMT400001475	AT5G24660.1	21798944
AT5G16560.1	PGSC0003DMT400001476	AT5G24660.1	21798944
AT5G16560.1	PGSC0003DMT400069515	AT5G24660.1	21798944
AT5G16560.1	PGSC0003DMT400063083	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g066340.2.1	Tomato	nucleus	70.1	95.88
PGSC0003DMT400038366	Potato	nucleus	41.46	63.95
PGSC0003DMT400047532	Potato	nucleus	56.53	62.33
Bra008613.1-P	Field mustard	nucleus	27.64	37.8
CDY28659	Canola	nucleus	27.89	36.39
PGSC0003DMT400017981	Potato	nucleus	34.42	36.34
CDX69443	Canola	nucleus	35.18	35.62
CDX70701	Canola	nucleus	34.42	35.58
CDY67252	Canola	nucleus	35.18	35.53
CDX78699	Canola	nucleus	34.42	35.49
AT5G16560.1	Thale cress	nucleus	35.18	34.74
CDY38105	Canola	nucleus	34.42	34.42
CDX85500	Canola	nucleus	34.42	34.34
PGSC0003DMT400034663	Potato	nucleus	37.69	33.33
KRH39002	Soybean	nucleus	33.42	32.28
KRH48713	Soybean	nucleus	33.17	31.73
PGSC0003DMT400030518	Potato	nucleus	24.12	31.17
Bra023570.1-P	Field mustard	cytosol	31.16	31.16
KXG25180	Sorghum	nucleus	31.91	26.74
Os08t0426866-00	Rice	nucleus	30.65	26.07
Zm00001d032249_P002	Maize	plastid	29.65	24.48
PGSC0003DMT400074183	Potato	mitochondrion	9.55	24.05
PGSC0003DMT400011207	Potato	nucleus	11.56	19.41
PGSC0003DMT400041071	Potato	nucleus	13.82	18.21
PGSC0003DMT400002410	Potato	nucleus	9.55	17.59
PGSC0003DMT400075668	Potato	nucleus	13.32	17.21
PGSC0003DMT400042480	Potato	nucleus	8.54	16.59
PGSC0003DMT400026419	Potato	nucleus	14.07	16.09
PGSC0003DMT400077217	Potato	nucleus	15.08	15.75
PGSC0003DMT400068508	Potato	nucleus	12.81	15.6
PGSC0003DMT400042402	Potato	nucleus	6.53	14.86
Bra006360.1-P	Field mustard	nucleus	25.38	13.78

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102583062	MapMan:15.5.2.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	UniProt:M1BE88	InterPro:Myb_dom_plants	PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400016767	PGSC:PGSC0003DMG400016767
EnsemblPlants:PGSC0003DMT400043200	PANTHER:PTHR31496	PANTHER:PTHR31496:SF10	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI0002959E05	RefSeq:XP_006365971.1	SEG:seg	:	:	:

Description

MYB transcription factor MYB34 [Source:PGSC_GENE;Acc:PGSC0003DMG400016767]

Coordinates

chr6:-:45200632..45208164

Molecular Weight (calculated)

44892.3 Da

IEP (calculated)

8.989

GRAVY (calculated)

-0.838

Length

398 amino acids

Sequence
(BLAST)

001: MELFPAQPDL SLQISPPNNK SSSTTTTWKT TSSNNNNTDR DEMNLFFLRR ALESKPDNNN TLFGLSLSNP NYKPSHTQLI NSSHFHPLQN NNFIHQQNQQ
101: QQLSFLRPIR GIPLYHQNPL PLSHHHNNYP IFAHQTFENT TTTTATATTP TLPIHSSGYC ITSFNNNSNK TIPNSSPTTI PFHHSNHQGG LMRSRFLSRF
201: PKRTMRAPRM RWTSSLHARF VHAVELLGGH ERATPKSVLE LMDVKDLTLA HVKSHLQMYR TVKTTDRAAV PASSGQSEVF DNGSSGETSE DLMPDMENSR
301: KSDLSDQQGK NSMHLQEIDY HGLWSNSSSR ESWQLHGKHG DYPGNIPSLE KTVKNQHIDL EAKCLSYDRL SGEVSSSSIT ETSPKKPNLE FTLGRPSE

Best Arabidopsis Sequence Match ( AT1G32240.1 )
(BLAST)

001: MELFPAQPDL SLQISPPNSK PSSTWQRRRS TTDQEDHEEL DLGFWRRALD SRTSSLVSNS TSKTINHPFQ DLSLSNISHH QQQQQHHHPQ LLPNCNSSNI
101: LTSFQFPTQQ QQQHLQGFLA HDLNTHLRPI RGIPLYHNPP PHHHPHRPPP PCFPFDPSSL IPSSSTSSPA LTGNNNSFNT SSVSNPNYHN HHHQTLNRAR
201: FMPRFPAKRS MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDKAAASSGQ SDVYENGSSG DNNSDDWMFD
301: MNRKSRDSEE LTNPLEKSNG LWTNSSGEAR LHGKLIDNVA EIMLPSEKEL DGKCSSYERI SSEEMSSSSI SGTSPFKPNL EFTLGRSH

Arabidopsis Description

KAN2Probable transcription factor KAN2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C616]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.