Factsheet for PGSC0003DMT400017981

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g051060.2.1	Tomato	nucleus	67.64	89.79
PGSC0003DMT400034663	Potato	nucleus	60.21	50.44
GSMUA_Achr8P22900_001	Banana	nucleus	43.77	43.77
PGSC0003DMT400038366	Potato	nucleus	28.38	41.47
PGSC0003DMT400047532	Potato	nucleus	34.22	35.73
PGSC0003DMT400043200	Potato	nucleus	36.34	34.42
PGSC0003DMT400030518	Potato	nucleus	24.93	30.52
PGSC0003DMT400074183	Potato	mitochondrion	9.02	21.52
PGSC0003DMT400011207	Potato	nucleus	12.47	19.83
PGSC0003DMT400041071	Potato	nucleus	13.79	17.22
PGSC0003DMT400002410	Potato	nucleus	9.81	17.13
PGSC0003DMT400026419	Potato	nucleus	14.59	15.8
PGSC0003DMT400075668	Potato	nucleus	12.73	15.58
PGSC0003DMT400068508	Potato	nucleus	12.73	14.68
PGSC0003DMT400042480	Potato	nucleus	7.96	14.63
PGSC0003DMT400077217	Potato	nucleus	14.59	14.44
PGSC0003DMT400042402	Potato	nucleus	6.37	13.71

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102585467	MapMan:15.5.2.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	UniProt:M1A9V2	InterPro:Myb_dom_plants	PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400006988	PGSC:PGSC0003DMG400006988
EnsemblPlants:PGSC0003DMT400017981	PANTHER:PTHR31496	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000295EE80
RefSeq:XP_006345506.1	SEG:seg	:	:	:	:

Description

KANADI like transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400006988]

Coordinates

chr5:-:45630640..45637267

Molecular Weight (calculated)

42308.1 Da

IEP (calculated)

7.807

GRAVY (calculated)

-0.751

Length

377 amino acids

Sequence
(BLAST)

001: MPLEGVFVQP NSSSSKQIPD LSLHISPPNN TNSSNKSSSS THNSLTELSL AHPTTNNEEN RSFSRNPFLQ QSQNMNSCYM INHQPHGVSL LDPIKGIPIY
101: HHHHQDSFSN FLEKDPKRLS SFGSLYSTPY INNLDHLSFL NNSCGTNVSS SRIPIVANRF HNQHNQYYNG VGLGSPSSHH ENSLMMRSRF LPKFPTKRSM
201: RAPRMRWTTS LHARFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVKSH LQMYRTVKTT DKPAASSGQS DGSGEEDLLA IDRILDQRGP SDGCDEPSTT
301: LWSNSSSSRE RLSQASFNES NGLIRSSSFP SQQRFGHHIE ECEYSRAMSY VGCSLDQKNP SLEFTLGRSD WVEKNHD

Best Arabidopsis Sequence Match ( AT5G16560.1 )
(BLAST)

001: MSMEGVFLEK TKTNTTTTLP DLSLHISLPD IHQYHHNESS KESSRRSSQL ENNNRSSNFE LSLSHHNHPT ARIFHCPDRR TLNLPHQQHY NNPIINGVHQ
101: RVDESEISNL HRPIRGIPVY HNRSFPFHQQ NSSLPSLGGG DMDQISILNS SSGYNNAYRS LQSSPRLKGV PLHHHHHHNQ YGVVGSSDSS SPHHHNHHHH
201: GMIRSRFLPK MPTKRSMRAP RMRWTSSLHA RFVHAVELLG GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTVKTTNKP AASSDGSGEE EMGINGNEVH
301: HQSSTDQRAQ SDDTSLHQET DISSTQPRWS NSSRETWPLS NNCSSDIDTM IRTSSTSMIS HYQRSSIQNQ EQRSNDQAKR CGNLSCENPS LEFTLGRPDW
401: HEK

Arabidopsis Description

KAN1Transcription repressor KAN1 [Source:UniProtKB/Swiss-Prot;Acc:Q93WJ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.