Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g008480.1.1 | Tomato | nucleus | 87.66 | 90.91 |
| VIT_01s0137g00050.t01 | Wine grape | nucleus | 49.03 | 49.84 |
| KRG90693 | Soybean | nucleus | 44.81 | 45.54 |
| Bra026202.1-P | Field mustard | nucleus | 24.03 | 37.0 |
| PGSC0003DMT400074183 | Potato | mitochondrion | 16.88 | 32.91 |
| GSMUA_Achr4P25920_001 | Banana | nucleus | 26.3 | 32.66 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.52 | 31.86 |
| AT2G02060.1 | Thale cress | nucleus, plastid | 25.97 | 31.25 |
| CDY41090 | Canola | nucleus | 25.0 | 31.17 |
| GSMUA_Achr11P... | Banana | nucleus | 23.38 | 30.77 |
| CDY45272 | Canola | nucleus | 24.68 | 30.77 |
| AT1G14600.1 | Thale cress | nucleus | 25.32 | 30.59 |
| KRH49492 | Soybean | nucleus | 29.55 | 30.33 |
| CDX82805 | Canola | nucleus | 23.7 | 30.17 |
| CDX81654 | Canola | nucleus | 23.7 | 30.17 |
| KRG89170 | Soybean | nucleus | 28.57 | 29.93 |
| CDY70922 | Canola | nucleus | 25.0 | 29.73 |
| CDY59419 | Canola | nucleus | 23.05 | 29.58 |
| Bra026818.1-P | Field mustard | nucleus | 23.05 | 29.58 |
| CDY09392 | Canola | nucleus | 25.0 | 29.39 |
| Bra026618.1-P | Field mustard | nucleus | 25.0 | 29.39 |
| CDY17443 | Canola | nucleus | 24.35 | 28.41 |
| Bra024836.1-P | Field mustard | nucleus | 23.38 | 27.8 |
| CDY17617 | Canola | nucleus | 23.38 | 27.69 |
| GSMUA_Achr2P11010_001 | Banana | nucleus | 25.97 | 27.4 |
| GSMUA_Achr5P19200_001 | Banana | nucleus | 25.32 | 27.27 |
| CDY04115 | Canola | nucleus | 23.38 | 26.57 |
| PGSC0003DMT400002410 | Potato | nucleus | 17.86 | 25.46 |
| PGSC0003DMT400011207 | Potato | nucleus | 19.16 | 24.89 |
| Bra017425.1-P | Field mustard | nucleus | 13.64 | 21.21 |
| PGSC0003DMT400026419 | Potato | nucleus | 23.05 | 20.4 |
| KRH36060 | Soybean | nucleus | 15.91 | 20.08 |
| PGSC0003DMT400068508 | Potato | nucleus | 20.78 | 19.57 |
| PGSC0003DMT400041071 | Potato | nucleus | 19.16 | 19.54 |
| CDY04116 | Canola | nucleus | 12.66 | 19.21 |
| PGSC0003DMT400038366 | Potato | nucleus | 15.58 | 18.6 |
| PGSC0003DMT400077217 | Potato | nucleus | 21.75 | 17.59 |
| PGSC0003DMT400042480 | Potato | nucleus | 10.71 | 16.1 |
| PGSC0003DMT400042402 | Potato | nucleus | 9.09 | 16.0 |
| PGSC0003DMT400047532 | Potato | nucleus | 17.86 | 15.24 |
| PGSC0003DMT400030518 | Potato | nucleus | 13.96 | 13.96 |
| PGSC0003DMT400043200 | Potato | nucleus | 17.21 | 13.32 |
| PGSC0003DMT400017981 | Potato | nucleus | 15.58 | 12.73 |
| PGSC0003DMT400034663 | Potato | nucleus | 16.23 | 11.11 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102592484 | MapMan:15.5.2.3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M1CVL1 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 |
| EnsemblPlantsGene:PGSC0003DMG400029440 | PGSC:PGSC0003DMG400029440 | EnsemblPlants:PGSC0003DMT400075668 | PFscan:PS51294 | PANTHER:PTHR31314 | PANTHER:PTHR31314:SF41 |
| InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0002964F1D | RefSeq:XP_006355021.1 | SEG:seg |
Description
Myb DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029440]
Coordinates
chr4:-:3444209..3448902
Molecular Weight (calculated)
35509.6 Da
IEP (calculated)
7.049
GRAVY (calculated)
-0.884
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCGRNGGV RQYIRSKVPR LRWTPDLHHC FVHAIEKLGG QDKATPKLVL QMMDVRGLTI SHVKSHLQMY RSMKSDVNKQ ERMSIQPRKQ VSLEDFDCHY
101: QQQEDEGCVE QQKLMVYQYP LSFSSSPNME RTDSTPYFNS VQPTKRTRIE RCSSQRIREA VSNEYNSRND YNIHSIMAAE KNETAQPLCN STTHIFNPLT
201: TSNELQESQF FKVMKTQDSN RDSSKRLKFE GSMKIDNVQE EEEEEEEDER GLSLSLSLHR PTTQRSNASS IISEISETIS SYSGGLNWNV WHSSSEKQNV
301: NLNLSIAL
101: QQQEDEGCVE QQKLMVYQYP LSFSSSPNME RTDSTPYFNS VQPTKRTRIE RCSSQRIREA VSNEYNSRND YNIHSIMAAE KNETAQPLCN STTHIFNPLT
201: TSNELQESQF FKVMKTQDSN RDSSKRLKFE GSMKIDNVQE EEEEEEEDER GLSLSLSLHR PTTQRSNASS IISEISETIS SYSGGLNWNV WHSSSEKQNV
301: NLNLSIAL
001: MGKSSGRNGN GSFNGNKFHG VRPYVRSPVP RLRWTPDLHR CFVHAVEILG GQHRATPKLV LKMMDVKGLT ISHVKSHLQM YRGGSKLTLE KPEESSSSSI
101: RRRQDSEEDY YLHDNLSLHT RNDCLLGFHS FPLSSHSSFR GGGGGRTKEQ QTSESGGYDD DADFLHIKKM NDTTTFLSHH FPKGTEEWRE QEHEEEEEDL
201: SLSLSLNHHH WRSNGSSVVS ETSEAAVSTC SAPFVSKDCF GSSKIDLNLS ISLLGS
101: RRRQDSEEDY YLHDNLSLHT RNDCLLGFHS FPLSSHSSFR GGGGGRTKEQ QTSESGGYDD DADFLHIKKM NDTTTFLSHH FPKGTEEWRE QEHEEEEEDL
201: SLSLSLNHHH WRSNGSSVVS ETSEAAVSTC SAPFVSKDCF GSSKIDLNLS ISLLGS
Arabidopsis Description
Glycosyltransferase [Source:UniProtKB/TrEMBL;Acc:Q7X887]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.