Factsheet for PGSC0003DMT400030518

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g079600.2.1	Tomato	nucleus	90.91	90.91
VIT_18s0001g11390.t01	Wine grape	nucleus	52.27	48.94
KRH05752	Soybean	nucleus	49.68	46.22
CDY69225	Canola	mitochondrion	24.68	46.06
AT5G42630.1	Thale cress	nucleus	37.01	41.3
KRH51927	Soybean	nucleus	43.18	40.3
KRH61226	Soybean	nucleus	43.18	40.18
CDY23916	Canola	nucleus	34.42	39.85
Bra021038.1-P	Field mustard	plastid	22.08	37.99
PGSC0003DMT400038366	Potato	nucleus	27.27	32.56
CDY68011	Canola	nucleus	22.08	32.23
CDX78794	Canola	nucleus	29.22	28.85
CDY54255	Canola	nucleus	27.27	28.09
AT4G17695.1	Thale cress	nucleus	29.22	27.95
Bra040176.1-P	Field mustard	nucleus	27.92	27.13
PGSC0003DMT400047532	Potato	nucleus	30.84	26.32
PGSC0003DMT400017981	Potato	nucleus	30.52	24.93
PGSC0003DMT400043200	Potato	nucleus	31.17	24.12
PGSC0003DMT400074183	Potato	mitochondrion	12.01	23.42
PGSC0003DMT400011207	Potato	nucleus	17.86	23.21
PGSC0003DMT400034663	Potato	nucleus	31.82	21.78
PGSC0003DMT400002410	Potato	nucleus	12.66	18.06
PGSC0003DMT400041071	Potato	nucleus	17.53	17.88
Bra035311.1-P	Field mustard	nucleus	36.04	17.79
CDY02401	Canola	nucleus	36.04	17.79
PGSC0003DMT400026419	Potato	nucleus	18.18	16.09
PGSC0003DMT400068508	Potato	nucleus	16.88	15.9
PGSC0003DMT400077217	Potato	nucleus	17.86	14.44
PGSC0003DMT400075668	Potato	nucleus	13.96	13.96
PGSC0003DMT400042402	Potato	nucleus	7.47	13.14
PGSC0003DMT400042480	Potato	nucleus	8.44	12.68

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
UniProt:M1AUD3	InterPro:Myb_dom_plants	PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400011688	PGSC:PGSC0003DMG400011688	EnsemblPlants:PGSC0003DMT400030518
PANTHER:PTHR31496	PANTHER:PTHR31496:SF12	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0002954265
SEG:seg	:	:	:	:	:

Description

ATS/KAN4 (ABERRANT TESTA SHAPE) [Source:PGSC_GENE;Acc:PGSC0003DMG400011688]

Coordinates

chr4:+:68942558..68947342

Molecular Weight (calculated)

34605.6 Da

IEP (calculated)

8.470

GRAVY (calculated)

-0.609

Length

308 amino acids

Sequence
(BLAST)

001: MTTDTVLSTV PDLSLQISLP SSILKSNQFK EEVRFDSTTD SGSSASGGSD LSHENTGFFH PEIKKVFNLP FIPSFEPTLS LGFGQVPINK NFQYHHQHYQ
101: PQIYGREFKR SSRLISGVKR SVRAPRMRWT STLHAHFVHA VQLLGGHERA TPKSVLELMN VKDLTLAHVK SHLQMYRTVK STDKATAKGQ GEIKIFLNQN
201: NGINNGEYEK SFEEIDALSQ PSTISQNMSH LRDPSSFMPD QTNAWSHSNR ERTFANYPHI YTNMDGIETA NNSSSNDTLL DLEFTLGRPN WKMGQAGSSS
301: NDLNLLKC

Best Arabidopsis Sequence Match ( AT5G42630.1 )
(BLAST)

001: MMMLESRNSM RASNSVPDLS LQISLPNYHA GKPLHGGDRS STSSDSGSSL SDLSHENNFF NKPLLSLGFD HHHQRRSNMF QPQIYGRDFK RSSSSMVGLK
101: RSIRAPRMRW TSTLHAHFVH AVQLLGGHER ATPKSVLELM NVKDLTLAHV KSHLQMYRTV KCTDKGSPGE GKVEKEAEQR IEDNNNNEEA DEGTDTNSPN
201: SSSVQKTQRA SWSSTKEVSR SISTQAYSHL GTTHHTKDNE EKEDTNIHLN LDFTLGRPSW GMEYAEPSSD LTLLKC

Arabidopsis Description

KAN4Probable transcription factor KAN4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.