Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400075668 | Potato | nucleus | 90.91 | 87.66 |
| VIT_01s0137g00050.t01 | Wine grape | nucleus | 48.48 | 47.52 |
| KRG90693 | Soybean | nucleus | 43.43 | 42.57 |
| Solyc09g005030.1.1 | Tomato | nucleus | 17.51 | 35.62 |
| Bra026202.1-P | Field mustard | nucleus | 23.91 | 35.5 |
| GSMUA_Achr4P25920_001 | Banana | nucleus | 26.26 | 31.45 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.97 | 30.17 |
| AT2G02060.1 | Thale cress | nucleus, plastid | 25.59 | 29.69 |
| CDY41090 | Canola | nucleus | 24.58 | 29.55 |
| GSMUA_Achr11P... | Banana | nucleus | 23.23 | 29.49 |
| CDY45272 | Canola | nucleus | 24.24 | 29.15 |
| KRH49492 | Soybean | nucleus | 29.29 | 29.0 |
| AT1G14600.1 | Thale cress | nucleus | 24.58 | 28.63 |
| KRG89170 | Soybean | nucleus | 28.28 | 28.57 |
| CDX82805 | Canola | nucleus | 23.23 | 28.51 |
| CDX81654 | Canola | nucleus | 23.23 | 28.51 |
| CDY59419 | Canola | nucleus | 22.9 | 28.33 |
| Bra026818.1-P | Field mustard | nucleus | 22.9 | 28.33 |
| CDY09392 | Canola | nucleus | 24.92 | 28.24 |
| Bra026618.1-P | Field mustard | nucleus | 24.92 | 28.24 |
| CDY70922 | Canola | nucleus | 24.58 | 28.19 |
| CDY17443 | Canola | nucleus | 23.91 | 26.89 |
| Bra024836.1-P | Field mustard | nucleus | 23.23 | 26.64 |
| CDY17617 | Canola | nucleus | 23.23 | 26.54 |
| Solyc02g080860.1.1 | Tomato | nucleus | 22.56 | 26.48 |
| Solyc12g006280.1.1 | Tomato | nucleus | 15.49 | 26.44 |
| GSMUA_Achr2P11010_001 | Banana | nucleus | 25.93 | 26.37 |
| CDY04115 | Canola | nucleus | 23.23 | 25.46 |
| GSMUA_Achr5P19200_001 | Banana | nucleus | 24.24 | 25.17 |
| Solyc03g006150.2.1 | Tomato | extracellular, nucleus | 22.9 | 22.15 |
| Solyc06g051060.2.1 | Tomato | nucleus | 18.18 | 21.26 |
| Solyc02g076670.2.1 | Tomato | nucleus | 22.9 | 20.12 |
| Bra017425.1-P | Field mustard | nucleus | 13.13 | 19.7 |
| Solyc10g076460.1.1 | Tomato | nucleus | 19.87 | 19.54 |
| Solyc02g080740.1.1 | Tomato | nucleus | 17.85 | 19.13 |
| Solyc02g080730.1.1 | Tomato | nucleus | 16.84 | 18.52 |
| KRH36060 | Soybean | nucleus | 15.15 | 18.44 |
| Solyc08g076400.2.1 | Tomato | nucleus | 15.82 | 17.87 |
| CDY04116 | Canola | nucleus | 12.12 | 17.73 |
| Solyc07g045000.2.1 | Tomato | nucleus | 10.1 | 17.05 |
| Solyc02g080720.1.1 | Tomato | nucleus | 18.52 | 16.87 |
| Solyc06g066340.2.1 | Tomato | nucleus | 16.5 | 16.84 |
| Solyc05g051060.2.1 | Tomato | nucleus | 15.49 | 16.2 |
| Solyc02g080710.1.1 | Tomato | nucleus | 18.18 | 15.04 |
| Solyc08g005260.1.1 | Tomato | nucleus | 17.51 | 14.4 |
| Solyc04g079600.2.1 | Tomato | nucleus | 14.14 | 13.64 |
| Solyc02g080680.1.1 | Tomato | mitochondrion | 9.09 | 11.79 |
| Solyc11g011770.1.1 | Tomato | nucleus | 16.5 | 10.61 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | UniProt:K4BP04 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR31314 | PANTHER:PTHR31314:SF41 | InterPro:SANT/Myb | SUPFAM:SSF46689 | EnsemblPlantsGene:Solyc04g008480.1 | EnsemblPlants:Solyc04g008480.1.1 |
| TIGRFAMs:TIGR01557 | UniParc:UPI0002767148 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4:-:2095913..2099972
Molecular Weight (calculated)
34042.0 Da
IEP (calculated)
8.057
GRAVY (calculated)
-0.813
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCGRNGGV RQYIRSKVPR LRWTPDLHHC FVHAIEKLGG QDKATPKLVL QMMDVRGLTI SNVKSHLQMY RSMKSDVNKQ GERMTIQPSK EVCLGDLDCH
101: YQQQEQEDEG CVEQQKLLVY QYPLSFSSNP NMKRTDSTPY FNSVQPTKRA RIERCSIREA VSNEYNSRND YNTEKNETTQ PLCNSTTHIF NPLTTSNELQ
201: ESLFFKVLKT QDSNRDSLKR FKFEDSMKID NVREDDDERG LSLSLSLHRP TTQRSNASSI ISEISETISS YSGGLNLNIW QSSSEKQNVN LNLSIAL
101: YQQQEQEDEG CVEQQKLLVY QYPLSFSSNP NMKRTDSTPY FNSVQPTKRA RIERCSIREA VSNEYNSRND YNTEKNETTQ PLCNSTTHIF NPLTTSNELQ
201: ESLFFKVLKT QDSNRDSLKR FKFEDSMKID NVREDDDERG LSLSLSLHRP TTQRSNASSI ISEISETISS YSGGLNLNIW QSSSEKQNVN LNLSIAL
001: MGRCGRSNDG VIGGVRPYVR SPVPRLRWTP ELHRSFVHAV DLLGGQYKAT PKLVLKIMDV KGLTISHVKS HLQMYRGSRI TLLGKPEESS SPSSRRRRRQ
101: DNEEDHLHDN LSVHARNDCL LGFHSFNFRE QTSATDNDDD DFLNIMNMER TKTFAGNGES IKFQSHHSLE AENTKNIWKN TWRENEHEEE EELSLSLSLN
201: HPHNHQQRWK SNASSSLSET SEAVSSSSGP FIFRDCFASS KIDLNLNLSF SLLHS
101: DNEEDHLHDN LSVHARNDCL LGFHSFNFRE QTSATDNDDD DFLNIMNMER TKTFAGNGES IKFQSHHSLE AENTKNIWKN TWRENEHEEE EELSLSLSLN
201: HPHNHQQRWK SNASSSLSET SEAVSSSSGP FIFRDCFASS KIDLNLNLSF SLLHS
Arabidopsis Description
Putative Myb family transcription factor At1g14600 [Source:UniProtKB/Swiss-Prot;Acc:Q700D9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.