Factsheet for Solyc08g076400.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038366	Potato	nucleus	90.87	92.64
GSMUA_Achr2P06700_001	Banana	cytosol, nucleus, plastid	31.18	48.52
Solyc08g005260.1.1	Tomato	nucleus	56.65	41.27
Solyc06g066340.2.1	Tomato	nucleus	45.25	40.89
GSMUA_Achr1P22100_001	Banana	nucleus	32.7	39.27
Solyc09g005030.1.1	Tomato	nucleus	16.73	30.14
TraesCS7D01G294400.1	Wheat	nucleus	38.4	29.11
TraesCS7B01G200700.1	Wheat	nucleus, plastid	38.4	29.11
TraesCS7A01G298700.1	Wheat	nucleus	38.02	28.99
Solyc05g051060.2.1	Tomato	nucleus	31.18	28.87
Zm00001d024532_P001	Maize	nucleus	38.02	28.09
Zm00001d049511_P001	Maize	nucleus	36.88	27.95
Os08t0160300-00	Rice	nucleus	36.12	27.54
Solyc04g079600.2.1	Tomato	nucleus	31.94	27.27
EES13398	Sorghum	nucleus	38.4	26.86
HORVU7Hr1G070420.2	Barley	nucleus	15.97	25.15
Solyc11g011770.1.1	Tomato	nucleus	41.83	23.81
Solyc12g006280.1.1	Tomato	nucleus	13.31	20.11
Solyc02g080860.1.1	Tomato	nucleus	18.63	19.37
Solyc06g051060.2.1	Tomato	nucleus	18.25	18.9
Solyc10g076460.1.1	Tomato	nucleus	18.25	15.89
Solyc04g008480.1.1	Tomato	nucleus	17.87	15.82
Solyc02g080740.1.1	Tomato	nucleus	16.35	15.52
Solyc03g006150.2.1	Tomato	extracellular, nucleus	17.87	15.31
Solyc02g080730.1.1	Tomato	nucleus	15.59	15.19
Solyc02g076670.2.1	Tomato	nucleus	18.63	14.5
Solyc02g080720.1.1	Tomato	nucleus	16.35	13.19
Solyc02g080710.1.1	Tomato	nucleus	17.49	12.81
Solyc07g045000.2.1	Tomato	nucleus	6.46	9.66
Solyc02g080680.1.1	Tomato	mitochondrion	6.84	7.86

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0044212
InterPro:Homeobox-like_sf	UniProt:K4CN03	InterPro:Myb_dom_plants	PFAM:PF00249	PANTHER:PTHR31496	PANTHER:PTHR31496:SF10
InterPro:SANT/Myb	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc08g076400.2	EnsemblPlants:Solyc08g076400.2.1	TIGRFAMs:TIGR01557	UniParc:UPI000276BEBD
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:60416534..60419892

Molecular Weight (calculated)

29613.9 Da

IEP (calculated)

9.466

GRAVY (calculated)

-0.608

Length

263 amino acids

Sequence
(BLAST)

001: MELFPAQPDL SLKISPPNIK PSSSTWKRKI TSEDDIHMDL GFCKRAHVVE STNPINTSSS SCFDLSLSNN PTKPNPNSSH HLHNLQNYNI SQQNQTIIRG
101: IPVYHQKPFN TTTTTTFPIT CSPCSIINNN NIKNTISSCA STRPNFQQGG FFRSRFLSRY STKRSTRAPR MRWTSTLHAH FVHAVELLGG HERATPKSVL
201: ELMDVKDLTL AHVKSHLQMY RTVKTTDRSA SSGQSEVFDN LSSGDTSEEL MVDEYFDPKS KLI

Best Arabidopsis Sequence Match ( AT1G32240.1 )
(BLAST)

001: MELFPAQPDL SLQISPPNSK PSSTWQRRRS TTDQEDHEEL DLGFWRRALD SRTSSLVSNS TSKTINHPFQ DLSLSNISHH QQQQQHHHPQ LLPNCNSSNI
101: LTSFQFPTQQ QQQHLQGFLA HDLNTHLRPI RGIPLYHNPP PHHHPHRPPP PCFPFDPSSL IPSSSTSSPA LTGNNNSFNT SSVSNPNYHN HHHQTLNRAR
201: FMPRFPAKRS MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDKAAASSGQ SDVYENGSSG DNNSDDWMFD
301: MNRKSRDSEE LTNPLEKSNG LWTNSSGEAR LHGKLIDNVA EIMLPSEKEL DGKCSSYERI SSEEMSSSSI SGTSPFKPNL EFTLGRSH

Arabidopsis Description

KAN2Probable transcription factor KAN2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C616]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.