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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
extracellular: 29876421
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400011207 Potato nucleus 63.19 81.86
Solyc02g076670.2.1 Tomato nucleus 55.7 50.59
Solyc09g005030.1.1 Tomato nucleus 20.2 42.47
VIT_12s0028g02080.t01 Wine grape nucleus 29.32 37.19
KRH11029 Soybean nucleus 38.76 32.6
KRH21258 Soybean nucleus 38.11 31.37
AT2G42660.1 Thale cress nucleus 24.76 29.8
KRH42874 Soybean nucleus 36.81 28.11
KRH58975 Soybean nucleus 36.48 27.93
Solyc06g051060.2.1 Tomato nucleus 22.8 27.56
KRH27060 Soybean nucleus 30.62 25.54
Solyc12g006280.1.1 Tomato nucleus 14.33 25.29
KRH22274 Soybean nucleus 29.64 24.66
Solyc10g076460.1.1 Tomato nucleus 24.1 24.5
CDY42825 Canola nucleus 25.73 24.16
CDY67147 Canola nucleus 25.41 23.85
Solyc02g080860.1.1 Tomato nucleus 19.22 23.32
GSMUA_Achr7P09370_001 Banana nucleus 28.34 23.02
Solyc04g008480.1.1 Tomato nucleus 22.15 22.9
GSMUA_Achr7P13880_001 Banana nucleus 29.32 21.95
Solyc02g080730.1.1 Tomato nucleus 17.59 20.0
GSMUA_Achr10P... Banana nucleus 33.55 19.88
TraesCS6D01G098200.1 Wheat nucleus 30.62 19.79
TraesCS6A01G109700.1 Wheat nucleus 30.62 19.71
HORVU6Hr1G019650.5 Barley nucleus 30.62 19.58
Solyc02g080740.1.1 Tomato nucleus 16.94 18.77
Os06t0543200-01 Rice nucleus 32.9 18.6
EES04827 Sorghum nucleus 31.92 18.46
OQU76531 Sorghum nucleus 30.29 18.16
Zm00001d016175_P001 Maize nucleus 31.92 18.15
Zm00001d046174_P001 Maize nucleus 30.94 17.89
Solyc08g076400.2.1 Tomato nucleus 15.31 17.87
Os02t0241200-00 Rice nucleus 31.6 17.8
TraesCS6B01G138200.1 Wheat nucleus 30.29 17.61
Solyc04g079600.2.1 Tomato nucleus 17.59 17.53
TraesCS7D01G334100.1 Wheat nucleus 29.32 17.41
TraesCS7B01G238000.1 Wheat nucleus 29.64 17.37
HORVU7Hr1G080530.3 Barley nucleus 28.66 17.22
Solyc06g066340.2.1 Tomato nucleus 16.29 17.18
TraesCS7A01G345200.2 Wheat nucleus 28.66 17.02
Solyc02g080710.1.1 Tomato nucleus 19.87 16.99
Zm00001d037015_P001 Maize nucleus 30.62 16.97
Bra000270.1-P Field mustard nucleus 15.64 16.67
Solyc02g080720.1.1 Tomato nucleus 17.26 16.26
Solyc08g005260.1.1 Tomato nucleus 18.24 15.51
Solyc05g051060.2.1 Tomato nucleus 14.33 15.49
Solyc07g045000.2.1 Tomato nucleus 7.82 13.64
Solyc02g080680.1.1 Tomato mitochondrion 9.45 12.66
Solyc11g011770.1.1 Tomato nucleus 16.29 10.82
Protein Annotations
Gene3D:1.10.10.60MapMan:35.1GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351
GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:Homeobox-like_sf
InterPro:IPR017930UniProt:K4BE38InterPro:Myb_domInterPro:Myb_dom_plantsPFAM:PF00249PFscan:PS51294
PANTHER:PTHR31314PANTHER:PTHR31314:SF43InterPro:SANT/MybSUPFAM:SSF46689EnsemblPlantsGene:Solyc03g006150.2EnsemblPlants:Solyc03g006150.2.1
TIGRFAMs:TIGR01557UniParc:UPI00027677DCSEG:seg:::
Description
No Description!
Coordinates
chr3:+:809502..813363
Molecular Weight (calculated)
35709.0 Da
IEP (calculated)
9.018
GRAVY (calculated)
-0.931
Length
307 amino acids
Sequence
(BLAST)
001: MTSDSIDLNE EVGDQEGIEV VISDESHEKI IDENNNNNST SCGDYENNKR VRQYVRSKLP RLRWTPELHL SFVSAIDRLG GQERATPKLV LQMMNVRGLS
101: IAHVKSHLQM YRSKKLGEFG QVLGHAYRTN NQGRSYLYGK LSQRLFNPLQ DFKMKNGAIV LARNFNDDDN HFQNSFAKTP YETKEKFPRY LENHEICPVR
201: QRHFHEEKRW PPCEFNQNKL NSQSLFHQNG PKWNCTYNSL GPKFKTPFRF EMKQDKMFIK EKDYLLPDLQ LGLSTTNQDN NNSKEKNSSD INTMLSLSLP
301: SYSSSAT
Best Arabidopsis Sequence Match ( AT2G38300.1 )
(BLAST)
001: MIPSMEGGGK TNREEEEEEE EEEEEGEESK VSSNSTVEES DKKTKVRPYV RSKVPRLRWT PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL
Arabidopsis Description
Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.