Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400011207 | Potato | nucleus | 63.19 | 81.86 |
Solyc02g076670.2.1 | Tomato | nucleus | 55.7 | 50.59 |
Solyc09g005030.1.1 | Tomato | nucleus | 20.2 | 42.47 |
VIT_12s0028g02080.t01 | Wine grape | nucleus | 29.32 | 37.19 |
KRH11029 | Soybean | nucleus | 38.76 | 32.6 |
KRH21258 | Soybean | nucleus | 38.11 | 31.37 |
AT2G42660.1 | Thale cress | nucleus | 24.76 | 29.8 |
KRH42874 | Soybean | nucleus | 36.81 | 28.11 |
KRH58975 | Soybean | nucleus | 36.48 | 27.93 |
Solyc06g051060.2.1 | Tomato | nucleus | 22.8 | 27.56 |
KRH27060 | Soybean | nucleus | 30.62 | 25.54 |
Solyc12g006280.1.1 | Tomato | nucleus | 14.33 | 25.29 |
KRH22274 | Soybean | nucleus | 29.64 | 24.66 |
Solyc10g076460.1.1 | Tomato | nucleus | 24.1 | 24.5 |
CDY42825 | Canola | nucleus | 25.73 | 24.16 |
CDY67147 | Canola | nucleus | 25.41 | 23.85 |
Solyc02g080860.1.1 | Tomato | nucleus | 19.22 | 23.32 |
GSMUA_Achr7P09370_001 | Banana | nucleus | 28.34 | 23.02 |
Solyc04g008480.1.1 | Tomato | nucleus | 22.15 | 22.9 |
GSMUA_Achr7P13880_001 | Banana | nucleus | 29.32 | 21.95 |
Solyc02g080730.1.1 | Tomato | nucleus | 17.59 | 20.0 |
GSMUA_Achr10P... | Banana | nucleus | 33.55 | 19.88 |
TraesCS6D01G098200.1 | Wheat | nucleus | 30.62 | 19.79 |
TraesCS6A01G109700.1 | Wheat | nucleus | 30.62 | 19.71 |
HORVU6Hr1G019650.5 | Barley | nucleus | 30.62 | 19.58 |
Solyc02g080740.1.1 | Tomato | nucleus | 16.94 | 18.77 |
Os06t0543200-01 | Rice | nucleus | 32.9 | 18.6 |
EES04827 | Sorghum | nucleus | 31.92 | 18.46 |
OQU76531 | Sorghum | nucleus | 30.29 | 18.16 |
Zm00001d016175_P001 | Maize | nucleus | 31.92 | 18.15 |
Zm00001d046174_P001 | Maize | nucleus | 30.94 | 17.89 |
Solyc08g076400.2.1 | Tomato | nucleus | 15.31 | 17.87 |
Os02t0241200-00 | Rice | nucleus | 31.6 | 17.8 |
TraesCS6B01G138200.1 | Wheat | nucleus | 30.29 | 17.61 |
Solyc04g079600.2.1 | Tomato | nucleus | 17.59 | 17.53 |
TraesCS7D01G334100.1 | Wheat | nucleus | 29.32 | 17.41 |
TraesCS7B01G238000.1 | Wheat | nucleus | 29.64 | 17.37 |
HORVU7Hr1G080530.3 | Barley | nucleus | 28.66 | 17.22 |
Solyc06g066340.2.1 | Tomato | nucleus | 16.29 | 17.18 |
TraesCS7A01G345200.2 | Wheat | nucleus | 28.66 | 17.02 |
Solyc02g080710.1.1 | Tomato | nucleus | 19.87 | 16.99 |
Zm00001d037015_P001 | Maize | nucleus | 30.62 | 16.97 |
Bra000270.1-P | Field mustard | nucleus | 15.64 | 16.67 |
Solyc02g080720.1.1 | Tomato | nucleus | 17.26 | 16.26 |
Solyc08g005260.1.1 | Tomato | nucleus | 18.24 | 15.51 |
Solyc05g051060.2.1 | Tomato | nucleus | 14.33 | 15.49 |
Solyc07g045000.2.1 | Tomato | nucleus | 7.82 | 13.64 |
Solyc02g080680.1.1 | Tomato | mitochondrion | 9.45 | 12.66 |
Solyc11g011770.1.1 | Tomato | nucleus | 16.29 | 10.82 |
Protein Annotations
Gene3D:1.10.10.60 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf |
InterPro:IPR017930 | UniProt:K4BE38 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
PANTHER:PTHR31314 | PANTHER:PTHR31314:SF43 | InterPro:SANT/Myb | SUPFAM:SSF46689 | EnsemblPlantsGene:Solyc03g006150.2 | EnsemblPlants:Solyc03g006150.2.1 |
TIGRFAMs:TIGR01557 | UniParc:UPI00027677DC | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3:+:809502..813363
Molecular Weight (calculated)
35709.0 Da
IEP (calculated)
9.018
GRAVY (calculated)
-0.931
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSDSIDLNE EVGDQEGIEV VISDESHEKI IDENNNNNST SCGDYENNKR VRQYVRSKLP RLRWTPELHL SFVSAIDRLG GQERATPKLV LQMMNVRGLS
101: IAHVKSHLQM YRSKKLGEFG QVLGHAYRTN NQGRSYLYGK LSQRLFNPLQ DFKMKNGAIV LARNFNDDDN HFQNSFAKTP YETKEKFPRY LENHEICPVR
201: QRHFHEEKRW PPCEFNQNKL NSQSLFHQNG PKWNCTYNSL GPKFKTPFRF EMKQDKMFIK EKDYLLPDLQ LGLSTTNQDN NNSKEKNSSD INTMLSLSLP
301: SYSSSAT
101: IAHVKSHLQM YRSKKLGEFG QVLGHAYRTN NQGRSYLYGK LSQRLFNPLQ DFKMKNGAIV LARNFNDDDN HFQNSFAKTP YETKEKFPRY LENHEICPVR
201: QRHFHEEKRW PPCEFNQNKL NSQSLFHQNG PKWNCTYNSL GPKFKTPFRF EMKQDKMFIK EKDYLLPDLQ LGLSTTNQDN NNSKEKNSSD INTMLSLSLP
301: SYSSSAT
001: MIPSMEGGGK TNREEEEEEE EEEEEGEESK VSSNSTVEES DKKTKVRPYV RSKVPRLRWT PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL
Arabidopsis Description
Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.