Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400074183 | Potato | mitochondrion | 85.63 | 94.3 |
| VIT_12s0028g00980.t01 | Wine grape | nucleus | 24.71 | 59.72 |
| GSMUA_Achr9P30700_001 | Banana | mitochondrion | 25.86 | 41.28 |
| GSMUA_Achr5P00310_001 | Banana | nucleus | 21.26 | 41.11 |
| KRH14524 | Soybean | nucleus | 37.36 | 34.76 |
| Solyc07g045000.2.1 | Tomato | nucleus | 33.91 | 33.52 |
| KRH73595 | Soybean | nucleus | 39.08 | 31.92 |
| Solyc09g005030.1.1 | Tomato | nucleus | 23.56 | 28.08 |
| HORVU7Hr1G107500.1 | Barley | mitochondrion | 10.92 | 25.33 |
| GSMUA_Achr7P03510_001 | Banana | nucleus | 29.31 | 24.76 |
| Zm00001d046981_P001 | Maize | nucleus | 27.59 | 22.75 |
| TraesCS7A01G469900.1 | Wheat | nucleus | 29.31 | 20.48 |
| TraesCS7B01G372000.1 | Wheat | nucleus | 29.31 | 20.4 |
| TraesCS7A01G470100.1 | Wheat | nucleus | 29.31 | 20.24 |
| HORVU7Hr1G107670.1 | Barley | nucleus | 28.74 | 20.16 |
| TraesCS7D01G457300.1 | Wheat | nucleus | 28.74 | 20.0 |
| OQU76857 | Sorghum | nucleus | 29.31 | 19.92 |
| Os06t0670300-01 | Rice | nucleus | 29.31 | 19.92 |
| TraesCS7D01G457600.1 | Wheat | nucleus | 28.16 | 19.84 |
| TraesCS7B01G372200.1 | Wheat | nucleus | 27.59 | 19.59 |
| TraesCS7D01G457400.1 | Wheat | nucleus | 28.16 | 19.52 |
| TraesCS7A01G470200.1 | Wheat | nucleus | 27.59 | 19.51 |
| Solyc02g080860.1.1 | Tomato | nucleus | 27.59 | 18.97 |
| HORVU7Hr1G107680.8 | Barley | nucleus | 28.16 | 18.77 |
| TraesCS7B01G372100.1 | Wheat | nucleus | 25.86 | 18.75 |
| TraesCS7D01G457500.1 | Wheat | nucleus | 26.44 | 18.7 |
| Solyc06g051060.2.1 | Tomato | nucleus | 25.29 | 17.32 |
| Zm00001d036638_P001 | Maize | nucleus | 25.86 | 16.92 |
| Solyc02g080740.1.1 | Tomato | nucleus | 25.86 | 16.25 |
| HORVU7Hr1G107630.5 | Barley | mitochondrion | 24.14 | 15.5 |
| Solyc04g008480.1.1 | Tomato | nucleus | 26.44 | 15.49 |
| Solyc02g080720.1.1 | Tomato | nucleus | 28.16 | 15.03 |
| Solyc03g006150.2.1 | Tomato | extracellular, nucleus | 25.29 | 14.33 |
| Solyc10g076460.1.1 | Tomato | nucleus | 24.71 | 14.24 |
| Solyc02g080730.1.1 | Tomato | nucleus | 21.26 | 13.7 |
| Solyc02g080710.1.1 | Tomato | nucleus | 28.16 | 13.65 |
| Solyc08g076400.2.1 | Tomato | nucleus | 20.11 | 13.31 |
| Solyc06g066340.2.1 | Tomato | nucleus | 21.84 | 13.06 |
| Solyc02g076670.2.1 | Tomato | nucleus | 25.29 | 13.02 |
| Solyc04g079600.2.1 | Tomato | nucleus | 22.41 | 12.66 |
| Solyc05g051060.2.1 | Tomato | nucleus | 20.11 | 12.32 |
| TraesCSU01G097800.1 | Wheat | plastid | 13.79 | 12.31 |
| Solyc08g005260.1.1 | Tomato | nucleus | 22.99 | 11.08 |
| Solyc02g080680.1.1 | Tomato | mitochondrion | 10.92 | 8.3 |
| Solyc11g011770.1.1 | Tomato | nucleus | 20.69 | 7.79 |
| CDY69675 | Canola | cytosol, nucleus | 2.87 | 4.31 |
| Zm00001d020382_P001 | Maize | nucleus, plastid | 2.3 | 3.74 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf |
| UniProt:K4DBG5 | InterPro:Myb_dom_plants | PFAM:PF00249 | PANTHER:PTHR31314 | PANTHER:PTHR31314:SF41 | InterPro:SANT/Myb |
| SUPFAM:SSF46689 | EnsemblPlantsGene:Solyc12g006280.1 | EnsemblPlants:Solyc12g006280.1.1 | TIGRFAMs:TIGR01557 | UniParc:UPI000276A7B4 | SEG:seg |
Description
No Description!
Coordinates
chr12:+:796674..800864
Molecular Weight (calculated)
20317.5 Da
IEP (calculated)
9.945
GRAVY (calculated)
-0.874
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIFLMSQEM MRKSKKMKEV RKYKKSLAPR LRWTPQLHHL FIQSVQNLGG RNKATPKRIV QMMAIKGLKI SHVKSHLQMY RNMREHPSLH VVMQDFNLSS
101: PMHVSKILGE HAQNSRKQKE SGSQNGENIH YNDFQEVEGS LSSGMTKEEE EDNDGEIYEY RETSTQINLD LTLS
101: PMHVSKILGE HAQNSRKQKE SGSQNGENIH YNDFQEVEGS LSSGMTKEEE EDNDGEIYEY RETSTQINLD LTLS
001: MKNPIVRSYV RSKVPRLRWN SDLHNSFVQA VEQLGGENRA TPKMVLQLMD VRGLTISHVK SHLQMYRGMK LEESMQEEIL AKRSVRVTGQ VTWWQFQHYL
101: HNYQRLQGNA NFFQNQQRQE AGIYEKIITF GQSSNETKEV PSDYFTCKSL YETSRAPQNK TRDDDENGEA VVAIEDDGNV VDEHDDEDAN DDEVTLSLNS
201: IKVSKSEEEL SLELTLGLKA
101: HNYQRLQGNA NFFQNQQRQE AGIYEKIITF GQSSNETKEV PSDYFTCKSL YETSRAPQNK TRDDDENGEA VVAIEDDGNV VDEHDDEDAN DDEVTLSLNS
201: IKVSKSEEEL SLELTLGLKA
Arabidopsis Description
Myb-like DNA-binding domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B8R6]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.