Factsheet for Solyc02g080680.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g080730.1.1	Tomato	nucleus	83.84	71.11
Solyc02g080740.1.1	Tomato	nucleus	65.07	53.79
Solyc02g080720.1.1	Tomato	nucleus	65.07	45.71
Solyc02g080710.1.1	Tomato	nucleus	62.45	39.83
PGSC0003DMT400042480	Potato	nucleus	23.58	26.34
CDY71094	Canola	mitochondrion	9.17	26.25
Bra018498.1-P	Field mustard	mitochondrion	6.99	22.54
Solyc02g080860.1.1	Tomato	nucleus	23.58	21.34
VIT_00s1624g00010.t01	Wine grape	nucleus	10.48	19.51
PGSC0003DMT400042402	Potato	nucleus	13.97	18.29
AT4G04555.1	Thale cress	mitochondrion	7.86	16.98
Solyc09g005030.1.1	Tomato	nucleus	8.73	13.7
CDY00733	Canola	mitochondrion, nucleus	7.86	12.68
KRG99004	Soybean	nucleus	11.35	12.5
Solyc06g051060.2.1	Tomato	nucleus	13.54	12.2
Solyc07g045000.2.1	Tomato	nucleus	9.17	11.93
CDX97319	Canola	mitochondrion	10.48	11.59
Bra029503.1-P	Field mustard	mitochondrion	8.3	11.05
CDY16660	Canola	mitochondrion	8.3	10.98
Solyc02g076670.2.1	Tomato	nucleus	16.16	10.95
Solyc12g006280.1.1	Tomato	nucleus	8.3	10.92
AT4G04605.1	Thale cress	mitochondrion	10.48	10.91
AT4G04580.1	Thale cress	nucleus	7.86	10.84
CDX94559	Canola	mitochondrion	7.86	10.4
KRH36473	Soybean	nucleus	12.66	10.25
KRH11454	Soybean	nucleus	12.66	10.1
Solyc03g006150.2.1	Tomato	extracellular, nucleus	12.66	9.45
Solyc04g008480.1.1	Tomato	nucleus	11.79	9.09
Solyc10g076460.1.1	Tomato	nucleus	11.35	8.61
KRH45989	Soybean	nucleus	5.68	8.07
Solyc06g066340.2.1	Tomato	nucleus	9.17	7.22
Solyc05g051060.2.1	Tomato	nucleus	8.73	7.04
Solyc08g076400.2.1	Tomato	nucleus	7.86	6.84
Solyc08g005260.1.1	Tomato	nucleus	10.48	6.65
Solyc04g079600.2.1	Tomato	nucleus	8.3	6.17
Solyc11g011770.1.1	Tomato	nucleus	10.04	4.98
Os12t0591600-01	Rice	nucleus	2.18	2.5

Protein Annotations

EnsemblPlants:Solyc02g080680.1.1	EnsemblPlantsGene:Solyc02g080680.1	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0044212
PANTHER:PTHR31496	PANTHER:PTHR31496:SF10	UniParc:UPI00027691FF	UniProt:K4B9T9	MapMan:35.2	:

Description

No Description!

Coordinates

chr2:+:44858828..44860487

Molecular Weight (calculated)

25775.8 Da

IEP (calculated)

9.195

GRAVY (calculated)

-0.580

Length

229 amino acids

Sequence
(BLAST)

001: MVLQIMNVKG VTISHIKSHL QMYRSLKHQE MQAEAANGRK RNRIDGADSM NNPRANLVHC YNHINGKAAV VDGSDQMNFP QGNLVNGYNH IKGKATMFDG
101: SDQMNFPQGN LVHCYNHNNG KAPIFNGSNQ MNFPQGNLVH CYNHNNGKAP IFNGSNQMNF PQENLVHRYN HNNGKSVFDG HLNPTVTTNY LEKIASSSTV
201: FPPPWMEMMI IKSCEHMVLA VCQIRVQLQ

Best Arabidopsis Sequence Match ( AT4G04605.1 )
(BLAST)

001: MKNPIVRSYV RSKVPRLRWN SDLHNSFVQA VEQLGGENRA TPKMVLQLMD VRGLTISHVK SHLQMYRGMK LEESMQEEIL AKRSVRVTGQ VTWWQFQHYL
101: HNYQRLQGNA NFFQNQQRQE AGIYEKIITF GQSSNETKEV PSDYFTCKSL YETSRAPQNK TRDDDENGEA VVAIEDDGNV VDEHDDEDAN DDEVTLSLNS
201: IKVSKSEEEL SLELTLGLKA

Arabidopsis Description

Myb-like DNA-binding domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B8R6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.