Factsheet for Bra029503.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16660	Canola	mitochondrion	99.42	98.84
CDX94559	Canola	mitochondrion	90.12	89.6
CDY00733	Canola	mitochondrion, nucleus	72.09	87.32
Bra018498.1-P	Field mustard	mitochondrion	23.84	57.75
AT4G04555.1	Thale cress	mitochondrion	26.16	42.45
VIT_00s1624g00010.t01	Wine grape	nucleus	24.42	34.15
AT4G04580.1	Thale cress	nucleus	26.16	27.11
KRG99004	Soybean	nucleus	31.98	26.44
Bra026202.1-P	Field mustard	nucleus	25.58	22.0
Solyc02g080860.1.1	Tomato	nucleus	29.07	19.76
Bra026818.1-P	Field mustard	nucleus	27.33	19.58
Bra026618.1-P	Field mustard	nucleus	29.65	19.47
Bra021038.1-P	Field mustard	plastid	19.77	18.99
Bra024836.1-P	Field mustard	nucleus	27.91	18.53
Solyc02g080740.1.1	Tomato	nucleus	26.16	16.25
Solyc02g080720.1.1	Tomato	nucleus	29.07	15.34
Solyc02g080730.1.1	Tomato	nucleus	23.84	15.19
Bra005124.1-P	Field mustard	nucleus	29.65	15.13
Solyc02g080710.1.1	Tomato	nucleus	30.81	14.76
PGSC0003DMT400042402	Potato	nucleus	13.95	13.71
PGSC0003DMT400042480	Potato	nucleus	16.28	13.66
Bra000180.1-P	Field mustard	nucleus	29.07	12.85
Bra004973.1-P	Field mustard	nucleus	30.23	12.78
Bra008613.1-P	Field mustard	nucleus	20.93	12.37
Bra040176.1-P	Field mustard	nucleus	22.67	12.3
Bra023254.1-P	Field mustard	nucleus	26.16	12.3
Bra017425.1-P	Field mustard	nucleus	13.95	12.12
Bra033844.1-P	Field mustard	nucleus	26.74	11.73
KRH45989	Soybean	nucleus	10.47	11.18
Bra023570.1-P	Field mustard	cytosol	23.26	10.05
Bra000270.1-P	Field mustard	nucleus	16.28	9.72
Solyc02g080680.1.1	Tomato	mitochondrion	11.05	8.3
Bra035311.1-P	Field mustard	nucleus	26.16	7.21
Os12t0591600-01	Rice	nucleus	5.81	5.0
Bra017021.1-P	Field mustard	nucleus	9.3	4.4
Bra006360.1-P	Field mustard	nucleus	12.79	3.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	EnsemblPlantsGene:Bra029503	EnsemblPlants:Bra029503.1	EnsemblPlants:Bra029503.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	UniProt:M4EL36	InterPro:Myb_dom_plants	PANTHER:PTHR31314
PANTHER:PTHR31314:SF41	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00025426FC	SEG:seg	:

Description

AT4G04580 (E=1e-029) | myb family transcription factor

Coordinates

chrA09:+:17498806..17501094

Molecular Weight (calculated)

20080.3 Da

IEP (calculated)

10.743

GRAVY (calculated)

-0.794

Length

172 amino acids

Sequence
(BLAST)

001: MENPIVRFYT KSKMPRLRWA SDLHHYFVYV VNQLGGERKA TPKKIVQAMG VKSLTLSHVK SHLQMYRNKK RRDSVQERRM RQEMRWRQSQ EHLQIYERLR
101: DATEFMQNQR RLSDNKEKTI AFLKPSNKTM EVGHADDGVV AAGYGANVRL DSTGVLKGEE KLSLGLTLGL NY

Best Arabidopsis Sequence Match ( AT4G04580.1 )
(BLAST)

001: MQDPMVRSYI RSDNPRMHWT DDLDIRFIQV IEKLGGEESA TPKRILSLMG VRDLTISHVK SHLQMYRNKK KEESSKEIKM MREMTQRQSQ QYLQIYERAT
101: QFIQNQQRLQ LDNTEKITPV LGSSNKSLDQ SSKVGLNENR GNDVVVVGGA TGEEELSLEL TLGRKY

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9XEB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.