Factsheet for Bra017021.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07070	Canola	nucleus	98.08	85.82
Bra000180.1-P	Field mustard	nucleus	72.25	67.61
Bra004973.1-P	Field mustard	nucleus	75.55	67.57
Bra005124.1-P	Field mustard	nucleus	19.23	20.77
TraesCS5A01G153000.1	Wheat	nucleus	16.76	18.71
TraesCS5D01G158300.1	Wheat	nucleus	16.48	18.52
TraesCS5B01G151800.1	Wheat	nucleus	17.03	18.4
GSMUA_Achr7P22410_001	Banana	nucleus	15.38	16.87
TraesCS4A01G180900.1	Wheat	nucleus	15.66	16.72
TraesCS4B01G136900.1	Wheat	nucleus	15.38	16.52
TraesCS4D01G131500.1	Wheat	nucleus	15.38	16.42
Os11t0106100-00	Rice	nucleus	8.24	14.08
EES09087	Sorghum	nucleus	14.01	14.05
Zm00001d005087_P001	Maize	nucleus	12.64	13.22
EES15503	Sorghum	nucleus	13.19	13.11
Bra026818.1-P	Field mustard	nucleus	8.52	12.92
Bra026202.1-P	Field mustard	nucleus	6.87	12.5
Bra000270.1-P	Field mustard	nucleus	9.62	12.15
Os12t0105600-01	Rice	nucleus	10.44	12.1
Bra017425.1-P	Field mustard	nucleus	6.32	11.62
Bra024836.1-P	Field mustard	nucleus	8.24	11.58
Bra026618.1-P	Field mustard	nucleus	7.97	11.07
Bra029503.1-P	Field mustard	mitochondrion	4.4	9.3
Bra021038.1-P	Field mustard	plastid	3.02	6.15
Bra040176.1-P	Field mustard	nucleus	4.95	5.68
Bra023254.1-P	Field mustard	nucleus	4.67	4.64
Bra033844.1-P	Field mustard	nucleus	4.95	4.59
Bra023570.1-P	Field mustard	cytosol	4.12	3.77
Bra008613.1-P	Field mustard	nucleus	2.75	3.44
Bra035311.1-P	Field mustard	nucleus	5.49	3.21
Bra006360.1-P	Field mustard	nucleus	5.77	2.86
Bra018498.1-P	Field mustard	mitochondrion	0.55	2.82

Protein Annotations

EnsemblPlants:Bra017021.1	EnsemblPlants:Bra017021.1-P	EnsemblPlantsGene:Bra017021	ncoils:Coil	PANTHER:PTHR31314	PANTHER:PTHR31314:SF41
SEG:seg	UniParc:UPI0002544F2C	UniProt:M4DKJ1	MapMan:35.2	:	:

Description

AT2G40260 (E=1e-090) | myb family transcription factor

Coordinates

chrA04:-:17087952..17089634

Molecular Weight (calculated)

40884.4 Da

IEP (calculated)

5.329

GRAVY (calculated)

-1.212

Length

364 amino acids

Sequence
(BLAST)

001: MTPSSQSSEN SKTCPSNNFK ATTTKEDNDK DEEEEEEEEE EEEEEDEEER SADQSPSSNS YVEESGSQHH HNNNDQIKKN GGSMYRSKKI DDLNQGNLLL
101: LGDQGFSFEH GAGYTYNLSQ PPMLQSFDQG PSTSLGYGGG SWIDHRRQVY RSPWRGLTAR DNTRTRQTLF SSQLGERFHG VSNSILDDKN KTISFRTNSR
201: EAAHASNGIG EAVPRSHRSF LEGMKTFNKS WGQSFPSNPN PSMPSKPQDH TAVTLNFHQS DNPRVGEETE NDLKRKRLLL SGDYNKSNPD LDLSLSLKVP
301: PTHNNLGECL LEEGEKEHED SKRLSLSLSS SSLSQHGRAI RKEDQNDHKK RKISVLASPL DLTL

Best Arabidopsis Sequence Match ( AT2G40260.1 )
(BLAST)

001: MRSSSQNSEN SKTCLSNNIK ATTKNEEDKD EEDDEEGEED EEERSGDQSP SSNSYEEESG SHHHDQNKKN GGSVRPYNRS KTPRLRWTPE LHICFLQAVE
101: RLGGPDRATP KLVLQLMNVK GLSIAHVKSH LQMYRSKKTD EPNEGDQGFS FEHGAGYTYN LSQLPMLQSF DQRPSSSLGY GGGSWTDHRR QIYRSPWRGL
201: TTRENTRTRQ TMFSSQPGER YHGVSNSILN DKNKTISFRI NSHEGVHDNN GVAGAVPRIH RSFLEGMKTF NKSWGQSLSS NLKSSTATIP QDHIATTLNS
301: YQWENAGVAE GSENVLKRKR LLFSDDCNKS DQDLDLSLSL KVPRTHDNLG ECLLEDEVKE HDDHQDIKSL SLSLSSSGSS KLDRTIRKED QTDHKKRKIS
401: VLASPLDLTL

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIZ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.