Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G158300.1 | Wheat | nucleus | 93.25 | 93.83 |
| TraesCS5B01G151800.1 | Wheat | nucleus | 93.25 | 90.21 |
| TraesCS4A01G180900.1 | Wheat | nucleus | 59.2 | 56.6 |
| VIT_08s0058g00250.t01 | Wine grape | nucleus | 16.87 | 47.41 |
| EES09087 | Sorghum | nucleus | 50.61 | 45.45 |
| EES15503 | Sorghum | nucleus | 50.61 | 45.08 |
| Solyc09g005030.1.1 | Tomato | nucleus | 19.33 | 43.15 |
| Os11t0106100-00 | Rice | nucleus | 26.99 | 41.31 |
| Zm00001d005087_P001 | Maize | nucleus | 42.64 | 39.94 |
| VIT_06s0004g07000.t01 | Wine grape | nucleus | 21.17 | 38.98 |
| Os12t0105600-01 | Rice | nucleus | 30.67 | 31.85 |
| Solyc06g051060.2.1 | Tomato | nucleus | 23.01 | 29.53 |
| GSMUA_Achr7P22410_001 | Banana | nucleus | 30.06 | 29.52 |
| Solyc10g076460.1.1 | Tomato | nucleus | 26.99 | 29.14 |
| PGSC0003DMT400041071 | Potato | nucleus | 26.38 | 28.48 |
| PGSC0003DMT400068508 | Potato | nucleus | 27.91 | 27.83 |
| KRH75999 | Soybean | nucleus | 29.14 | 27.7 |
| CDY52431 | Canola | nucleus | 32.52 | 27.25 |
| Bra000180.1-P | Field mustard | nucleus | 32.21 | 26.99 |
| KRH65638 | Soybean | nucleus | 28.53 | 26.88 |
| CDX74803 | Canola | nucleus | 31.6 | 26.82 |
| CDY07612 | Canola | nucleus | 32.21 | 26.79 |
| CDY07070 | Canola | nucleus | 33.74 | 26.44 |
| Bra004973.1-P | Field mustard | nucleus | 32.82 | 26.29 |
| PGSC0003DMT400077217 | Potato | nucleus | 30.67 | 26.25 |
| CDY18860 | Canola | nucleus | 32.52 | 26.04 |
| AT2G40260.1 | Thale cress | nucleus | 32.21 | 25.61 |
| CDX93206 | Canola | nucleus | 32.82 | 25.6 |
| KRH00305 | Soybean | nucleus | 28.83 | 25.47 |
| KRH49433 | Soybean | nucleus | 28.53 | 25.41 |
| TraesCS7A01G470100.1 | Wheat | nucleus | 18.71 | 24.21 |
| TraesCS7A01G469900.1 | Wheat | nucleus | 18.4 | 24.1 |
| TraesCS7A01G470200.1 | Wheat | nucleus | 17.48 | 23.17 |
| VIT_13s0067g01500.t01 | Wine grape | extracellular, vacuole | 31.9 | 22.17 |
| TraesCS2A01G402700.1 | Wheat | nucleus | 19.33 | 21.28 |
| TraesCS6A01G109700.1 | Wheat | nucleus | 29.75 | 20.34 |
| TraesCS1A01G202500.1 | Wheat | nucleus | 21.78 | 20.11 |
| TraesCS6A01G254700.1 | Wheat | nucleus | 17.79 | 19.14 |
| TraesCS5A01G496100.1 | Wheat | nucleus | 19.63 | 16.93 |
| TraesCS6A01G007300.1 | Wheat | nucleus | 17.18 | 16.87 |
| Bra017021.1-P | Field mustard | nucleus | 18.71 | 16.76 |
| TraesCS6A01G266400.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 17.18 | 15.77 |
| TraesCS7A01G345200.2 | Wheat | nucleus | 24.85 | 15.67 |
| TraesCS4A01G242600.1 | Wheat | nucleus | 17.79 | 15.63 |
| TraesCS5A01G064700.1 | Wheat | nucleus | 16.26 | 15.19 |
| TraesCS7A01G298700.1 | Wheat | nucleus | 15.95 | 15.07 |
| TraesCS5A01G402800.1 | Wheat | mitochondrion, plastid | 15.64 | 13.49 |
| TraesCS5A01G203200.1 | Wheat | nucleus | 16.56 | 11.92 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR31314 | PANTHER:PTHR31314:SF41 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | EnsemblPlantsGene:TraesCS5A01G153000 |
| EnsemblPlants:TraesCS5A01G153000.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:330199194..330200856
Molecular Weight (calculated)
35771.7 Da
IEP (calculated)
7.765
GRAVY (calculated)
-0.678
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MEASKGGDGS SGASASNDDS TVEEEGAGRE EQEDACRGNS LSSSSVRPYV RSKNPRLRWT PELHHCFVRA IHRLGGQDRA TPKLVLQLMN VRGLSIGHVK
101: SHLQMYRSKK IDDSGQVIGH LPLPHAFHHR QSGAGTMLSR FGAAAWPPWR SFHEPYWAHG RPFLATGSRT YNSLEAEAEA AFLRSRAQHV ARAASSNPGL
201: MMQSGCPSWN DHHTMNHQHK RLLQPTVCNA DDIHISLDLD LDLSLGLPVP RREAKRKRSG CGWVKEGPDE NGADEEQVDE TSSATMLSLS LFSSGDAPRK
301: MSSTSASDRA VDEHATRRAS TLDLTI
101: SHLQMYRSKK IDDSGQVIGH LPLPHAFHHR QSGAGTMLSR FGAAAWPPWR SFHEPYWAHG RPFLATGSRT YNSLEAEAEA AFLRSRAQHV ARAASSNPGL
201: MMQSGCPSWN DHHTMNHQHK RLLQPTVCNA DDIHISLDLD LDLSLGLPVP RREAKRKRSG CGWVKEGPDE NGADEEQVDE TSSATMLSLS LFSSGDAPRK
301: MSSTSASDRA VDEHATRRAS TLDLTI
001: MIPSMEGGGK TNREEEEEEE EEEEEGEESK VSSNSTVEES DKKTKVRPYV RSKVPRLRWT PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL
Arabidopsis Description
Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.