Factsheet for TraesCS6A01G254700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G236000.1	Wheat	mitochondrion	89.11	88.82
TraesCS6B01G270800.1	Wheat	nucleus	86.8	82.7
HORVU6Hr1G064920.1	Barley	mitochondrion	46.86	60.17
HORVU0Hr1G016420.1	Barley	mitochondrion	46.53	59.75
TraesCS7A01G470100.1	Wheat	nucleus	19.47	23.41
TraesCS7A01G469900.1	Wheat	nucleus	19.14	23.29
TraesCS7A01G470200.1	Wheat	nucleus	18.81	23.17
TraesCS2A01G402700.1	Wheat	nucleus	20.79	21.28
KXG31083	Sorghum	nucleus	21.45	20.31
TraesCS1A01G202500.1	Wheat	nucleus	22.11	18.98
TraesCS5A01G496100.1	Wheat	nucleus	22.77	18.25
Zm00001d017563_P002	Maize	nucleus	20.79	18.21
TraesCS5A01G153000.1	Wheat	nucleus	19.14	17.79
TraesCS4A01G180900.1	Wheat	nucleus	19.14	17.01
TraesCS6A01G007300.1	Wheat	nucleus	16.17	14.76
TraesCS5A01G064700.1	Wheat	nucleus	16.83	14.61
TraesCS6A01G266400.1	Wheat	cytosol, nucleus, peroxisome, plastid	16.5	14.08
TraesCS6A01G109700.1	Wheat	nucleus	22.11	14.05
TraesCS4A01G242600.1	Wheat	nucleus	17.16	14.02
TraesCS7A01G298700.1	Wheat	nucleus	15.18	13.33
TraesCS5A01G402800.1	Wheat	mitochondrion, plastid	16.17	12.96
TraesCS5A01G203200.1	Wheat	nucleus	17.49	11.7
TraesCS7A01G345200.2	Wheat	nucleus	19.47	11.41

Protein Annotations

EnsemblPlants:TraesCS6A01G254700.1	EnsemblPlantsGene:TraesCS6A01G254700	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Myb_dom_plants	InterPro:SANT/Myb	PANTHER:PTHR31314	PANTHER:PTHR31314:SF6
PFAM:PF00249	SEG:seg	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	MapMan:35.1	:

Description

No Description!

Coordinates

chr6A:+:472348465..472354697

Molecular Weight (calculated)

33196.5 Da

IEP (calculated)

9.673

GRAVY (calculated)

-0.558

Length

303 amino acids

Sequence
(BLAST)

001: MARKEAWRRS GLVRQYTRSS VPRMRWTAEL ESSFVGAVER LGGRDSAKVT PKRILKLMDV SGLTISHVKS HLQMYRCTPH DNGKKETRPQ LDLKNRPFAT
101: DERGSEGLTF PPMKRAKAGT EVAASCKSMQ GNSGMSVMIP GNRCYIDDYV QVQAMSMDRM RRSVNQGLRL RRRSAAAASL QELGPWVQGQ EASKDSKPEA
201: VRRLNHTTRQ LPSMESYESG CFLFSSATSG EDEPAYLGGN GCSPSPCFAV EQRAVKDVSP WPSESSCVLS PSSRSFSDCS GPPGCSFAGQ GISLELSLSM
301: PGL

Best Arabidopsis Sequence Match ( AT4G04605.1 )
(BLAST)

001: MKNPIVRSYV RSKVPRLRWN SDLHNSFVQA VEQLGGENRA TPKMVLQLMD VRGLTISHVK SHLQMYRGMK LEESMQEEIL AKRSVRVTGQ VTWWQFQHYL
101: HNYQRLQGNA NFFQNQQRQE AGIYEKIITF GQSSNETKEV PSDYFTCKSL YETSRAPQNK TRDDDENGEA VVAIEDDGNV VDEHDDEDAN DDEVTLSLNS
201: IKVSKSEEEL SLELTLGLKA

Arabidopsis Description

Myb-like DNA-binding domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B8R6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.